Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01004 ATGACGGGCTCTGGTTCTCCTTGTGGAGCTTGTAAATTCTTGAGAAGAAAATGTGTTAGAGGATGTGTTTTTGCACCATATTTTTGCCATGAACAAGGAGCTACTCATTTTGCTGCCATTCATAAAGTTTTTGGAGCTAGTAATGTGTCTAAGCTTCTTGCTCGTCTTCCTATTAGTGAAAGATGTGAGGCTGCTGTTACTATTTCTTATGAAGCTCAAGCTAGGCTTCAAGATCCTATCTATGGCTGTGTTTCTCATATCTTTGCCCTTCAACAACAGGTTGTGAGTCTTCAGGCACAACTTGCTTCTTTGAAGGAACAAGCAGCGGAAAGCATTATGAACGCGTCCAGTAATGGAGGTGGAGTGAATGAGAAGATTAATAATAGAAAGGTTCCTTCTCATCCCCAAGATCTCCATAGTTGGTTTCAATCGGAGCAACCGAACGTAACACTCGAGTTCAATCCGAATCCAACTCCGAATAATAATTCAGCATCAAACCCTTATTATGATGAGAATTATTGCATTATGGTTAATTCACAATCTAATGGGAACTATGAACATCACATGACTAAAATGGAGGAAAGTGGATCATATGGAAGCTTTGAAGAAACCTCAGGCTATTCCATGTACACTCTTGATCAATTGCATTCAAATGTTCAACAATGGAGCTTCAATGAGTCTGCTGATGATTTACAATCAGTTGCTTTTGGCAACAGACATTGGTGA 726 39.67 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLARLPISERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQLASLKEQAAESIMNASSNGGGVNEKINNRKVPSHPQDLHSWFQSEQPNVTLEFNPNPTPNNNSASNPYYDENYCIMVNSQSNGNYEHHMTKMEESGSYGSFEETSGYSMYTLDQLHSNVQQWSFNESADDLQSVAFGNRHW 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17507404 17508853 - Lsi05G010040.1 Lsi05g01004 663496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01004 241 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 1 238 - -
Lsi05g01004 241 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 238 - -
Lsi05g01004 241 Pfam Lateral organ boundaries (LOB) domain 7 105 IPR004883 -
Lsi05g01004 241 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Lsi05g01004 241 Coils Coil 87 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02174 Lsi-Chr2:28249775 Lsi05g01004 Lsi-Chr5:17507404 2.50E-62 dispersed
Lsi03g01564 Lsi-Chr3:26624536 Lsi05g01004 Lsi-Chr5:17507404 7.14E-52 dispersed
Lsi04g00900 Lsi-Chr4:9058399 Lsi05g01004 Lsi-Chr5:17507404 5.15E-46 dispersed
Lsi05g01004 Lsi-Chr5:17507404 Lsi09g01900 Lsi-Chr9:27833481 8.63E-45 dispersed
Lsi05g01003 Lsi-Chr5:17497304 Lsi05g01004 Lsi-Chr5:17507404 3.24E-54 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25344 PF03195 LOB 1.00E-35 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01004 K13945 - csv:101214764 443.736