Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01011 ATGGAATCCTCTTACTTTTCGTTTTCCGATTCGGATTTCTCGACGGAATCTTCATTCGGATCAACGGAATCATCGTTCTCATGGAGTGAATTTTTCTCGATCCAAAGTACCCTAGAAAACTCAATCTCACTACACGAAGAATTTCTCGGGAATCAAACATCGGAATCGGAATCGAAAATTGTAGTGAAGGAAGAAATCGAAGTGAGTTCGATTGATTTCGAGGAGGAGAAACAGAGGAAGACGACGGAGAAGAGTTACAGAGGAGTGAGACGACGGCCGTGGGGGAAATACGCGGCGGAGATTAGGGATTCGACGAGGCATGGAGTTAGGGTTTGGCTTGGAACTTTTGATAGCGCTGAAGCTGCGGCTTTAGCTTACGATCAAGCGGCATTTTCGATGAGAGGAGCAATGGCGGTGCTAAATTTTCCGGTGGAAATGGTGAGGGAATCACTGCAGGATATTAAGTATCAACTGGAAGAAGGATGTTCGCCGGTGGTGGCTTTGAAAAGGAAACACTCAATGAGAAGGAAGTCGGCGGCGGCGGGGGCGGCGGTGGAGAAAAAGAAGATGAAGAGAAAGAACAATGTGGTGATTTTGGAAGATCTGGGAACAGAGTATTTGGAAGAACTTTTGATGCTAAGTTCATGTGAGAGTAGTAGTGTTAATCCTTTCTAA 675 45.63 MESSYFSFSDSDFSTESSFGSTESSFSWSEFFSIQSTLENSISLHEEFLGNQTSESESKIVVKEEIEVSSIDFEEEKQRKTTEKSYRGVRRRPWGKYAAEIRDSTRHGVRVWLGTFDSAEAAALAYDQAAFSMRGAMAVLNFPVEMVRESLQDIKYQLEEGCSPVVALKRKHSMRRKSAAAGAAVEKKKMKRKNNVVILEDLGTEYLEELLMLSSCESSSVNPF 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17588315 17588989 + Lsi05G010110.1 Lsi05g01011 663503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01011 224 SUPERFAMILY DNA-binding domain 85 145 IPR016177 GO:0003677
Lsi05g01011 224 SMART rav1_2 85 149 IPR001471 GO:0003700|GO:0006355
Lsi05g01011 224 Gene3D AP2/ERF domain 84 145 IPR036955 GO:0003700|GO:0006355
Lsi05g01011 224 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 41 213 - -
Lsi05g01011 224 CDD AP2 84 144 IPR001471 GO:0003700|GO:0006355
Lsi05g01011 224 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Lsi05g01011 224 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Lsi05g01011 224 Pfam AP2 domain 85 135 IPR001471 GO:0003700|GO:0006355
Lsi05g01011 224 PANTHER DNA-BINDING DOMAIN 41 213 IPR044808 GO:0003700|GO:0009873
Lsi05g01011 224 MobiDBLite consensus disorder prediction 1 23 - -
Lsi05g01011 224 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g02215 Lsi05g01011 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02215 Lsi-Chr2:28581082 Lsi05g01011 Lsi-Chr5:17588315 3.64E-61 dispersed
Lsi05g01011 Lsi-Chr5:17588315 Lsi01g00271 Lsi-Chr1:2414741 2.04E-29 dispersed
Lsi05g01011 Lsi-Chr5:17588315 Lsi05g01725 Lsi-Chr5:24698937 4.44E-58 wgd
Lsi05g01011 Lsi-Chr5:17588315 Lsi09g01239 Lsi-Chr9:20024331 4.73E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25345 PF00847 AP2 1.20E-14 CL0081 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01011 K14516 - csv:101220325 306.605