Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi05g01012 | ATGGTGAAAGACCAATTAGAAGTATTAAATGCACTTGATGTTGCGAAAACGCAATGGTACCATTTCACAACAATCATAATTGCTGGAATGGGATTCTTCACTGATGCATATGATCTATTTTGCATATCTCTTGTCACAAAATTACTTGGACGTATATACTATCATGTTGATGGTGCACCAAAGCCAGGGACATTGCCCCCAAATGTTGCTGCTGCTGTTAATGGTGTGGCATTTTGTGGAACTTTAGCAGGCCAACTCTTCTTTGGCTGGTTGGGTGACAAAATGGGGAGAAAACGAGTTTATGGCATGACTTTAATGTTAATGGTTATATGCTCTATAGGCTCAGGCCTTTCCTTTGGTCACAATTCACAATCTGTCATGACTACTCTTTGCTTCTTTCGATTTTGGCTCGGGTTTGGTATTGGTGGCGATTACCCTCTTTCGGCAACGATCATGTCGGAATGCTCAAATAAGAAGACTCGTGGTGCATTCATTGCTGCAGTGTTTGCCATGCAAGGGTTTGGAATTTTGGGTGGAGGCATATTTGCCATTATCATCTCTTTGGCATTTAAAGCCAAGTTTGATGCTCCACCTTATGCAGTTGATCCAATGAAATCAACTGTGCCACAAGCAGATTACATTTGA | 645 | 41.4 | MVKDQLEVLNALDVAKTQWYHFTTIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAPKPGTLPPNVAAAVNGVAFCGTLAGQLFFGWLGDKMGRKRVYGMTLMLMVICSIGSGLSFGHNSQSVMTTLCFFRFWLGFGIGGDYPLSATIMSECSNKKTRGAFIAAVFAMQGFGILGGGIFAIIISLAFKAKFDAPPYAVDPMKSTVPQADYI | 214 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 17605290 | 17605934 | + | Lsi05G010120.1 | Lsi05g01012 | 663504 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi05g01012 | 214 | PANTHER | HIGH AFFINITY INORGANIC PHOSPHATE TRANSPORTER | 1 | 214 | - | - | |
| Lsi05g01012 | 214 | PANTHER | SOLUTE CARRIER FAMILY 22 MEMBER | 1 | 214 | - | - | |
| Lsi05g01012 | 214 | ProSiteProfiles | Major facilitator superfamily (MFS) profile. | 24 | 214 | IPR020846 | GO:0022857 | |
| Lsi05g01012 | 214 | Pfam | Sugar (and other) transporter | 26 | 188 | IPR005828 | GO:0016021|GO:0022857|GO:0055085 | |
| Lsi05g01012 | 214 | Gene3D | MFS general substrate transporter like domains | 20 | 211 | IPR036259 | - | |
| Lsi05g01012 | 214 | SUPERFAMILY | MFS general substrate transporter | 11 | 189 | IPR036259 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi05g01012 | Lsi-Chr5:17605290 | Lsi05g01034 | Lsi-Chr5:17891068 | 9.23E-151 | dispersed | |
| Lsi05g01012 | Lsi-Chr5:17605290 | Lsi05g01014 | Lsi-Chr5:17615975 | 9.01E-151 | proximal | |
| Lsi05g01012 | Lsi-Chr5:17605290 | Lsi05g01727 | Lsi-Chr5:24715306 | 5.28E-120 | wgd | |
| Lsi05g01012 | Lsi-Chr5:17605290 | Lsi09g01236 | Lsi-Chr9:19877147 | 8.30E-122 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi05g01012 | K08176 | - | bhj:120078040 | 394.045 |