Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01013 ATGAAAATGCCTGAAACGGCACGATACACGGCTCTTGTAGTGAAAGATACAACTCAAACTGCATCAGATGTATCAAAAGTTCTGCAAATGGATATTGAGGCAGAAGCACGAAAGCCTGCTCCTCCGCAAATGCCAAATGCAAGTGCAAGTGCATATGGCTTGTTCTCCATAGAGTTTCTCCGTCGCCATGGAACTCACTTACTTGGTACTACAAGTACTTGGTTTTTACTTGATATTGCATTTTACAGTCAAAACTTGTTTCAAAAAGATATCTTCAGTGCAATTGGATGGATTCCTCCAGCAATCACTATGAATGCAATTGAAGAAGTTTTTAGAATAGCGAGGGCTCAAACACTAATTGCCCTCTGCAGTACTGTCCCTGGCTATTGGTTCACAGTGGCTTTCATTGACAAAATGGGAAGATTTGCCATTCAACTCCTGGGATTCTTCTTTATGACAGTTTTCATGTTGGCTTTAGCCATTCCATACCATCATTGGACTCTAAAGGTCAATCGGATTGGCTTTGTCGTCCTTTACTCACTAACGTTCTTCTTTGCGAATTTTGGACCGAATGCAACAACTTTCGTTGTCCCAGCTGAAATCTTTCCAGCACGATTCCGTTCTACTTGCCACGGTATATCATCAGCATCTGGGAAGCTTGGAGCTATTGTGGGTGCATTTGGTTTTCTATATTTGGCTCAAAACCAAGACAAGAACAAAACTGATGCAGGATACCCTCCTGGCATTGGTGTCAAGAACTCACTTCTACTGTTGGGTGGACTTAACTTTTTGGAAATTTTGTTTACTTTTCTCGTGCCTGAAGCAAAGGGTAAATCGTTGGAAGAGATGTCGGGTGAGAATGAAGATGGAACAATGGTAGACTTAGGAGGCCAACCATCTACCACTAACGATACAGTCTCACATGTTTAA 930 41.94 MKMPETARYTALVVKDTTQTASDVSKVLQMDIEAEARKPAPPQMPNASASAYGLFSIEFLRRHGTHLLGTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAITMNAIEEVFRIARAQTLIALCSTVPGYWFTVAFIDKMGRFAIQLLGFFFMTVFMLALAIPYHHWTLKVNRIGFVVLYSLTFFFANFGPNATTFVVPAEIFPARFRSTCHGISSASGKLGAIVGAFGFLYLAQNQDKNKTDAGYPPGIGVKNSLLLLGGLNFLEILFTFLVPEAKGKSLEEMSGENEDGTMVDLGGQPSTTNDTVSHV 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17605989 17606918 + Lsi05G010130.1 Lsi05g01013 663505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01013 309 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-7-RELATED 2 291 - -
Lsi05g01013 309 MobiDBLite consensus disorder prediction 281 309 - -
Lsi05g01013 309 Gene3D MFS general substrate transporter like domains 47 297 IPR036259 -
Lsi05g01013 309 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 277 IPR020846 GO:0022857
Lsi05g01013 309 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 2 291 - -
Lsi05g01013 309 MobiDBLite consensus disorder prediction 294 309 - -
Lsi05g01013 309 Pfam Sugar (and other) transporter 120 284 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lsi05g01013 309 SUPERFAMILY MFS general substrate transporter 43 284 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01013 Lsi-Chr5:17605989 Lsi05g01034 Lsi-Chr5:17891068 0 dispersed
Lsi05g01013 Lsi-Chr5:17605989 Lsi05g01014 Lsi-Chr5:17615975 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01013 K08176 - qsu:111998651 486.108