Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01014 ATGGGAAAAGACCAATTAGAAGTACTAAATGCACTTGATGTAGCGAAAACACAATGGTACCATTTCACAGCAATCATAATTGCTGGAATGGGATTCTTCACTGATGCATATGATCTATTTTGCATATCTCTTGTCACAAAATTACTTGGACGTATATACTATCATGTTGATGGTGCACCAAAGCCAGGGACATTGCCTCCAAATGTTGCTGCTGCTGTTAATGGTGTGGCATTTTGTGGAACTCTAGCAGGCCAACTCTTTTTTGGCTGGTTGGGTGACAAAATGGGGAGAAAACGAGTTTATGGCATGACTCTAATGCTTATGGTTATATGCTCTATAGGCTCAGGCCTTTCCTTTGGCCACAATTCACAATCTGTCATGACTACTCTTTGCTTCTTTCGGTTTTGGCTCGGGTTTGGTATTGGTGGCGATTACCCTCTTTCGGCAACGATCATGTCGGAATACTCGAATAAGGAGACTCGTGGTGCATTCATTGCTGCAGTGTTTGCTATGCAAGGGTTTGGAATTTTGGGTGGAGGCATATTTGCCATTATCATCTCTTTGGCATTTAAAGCCAAGTTTGATTCTCCCCCTTATGCAGTCGATCCAATTAAATCAACTGTGCCACAAGCAGATTACATTTGGAGGATAGTTCTAATGGTTGGAGCTCTTCCTGCCGCTCTTACGTACTATTGGAGGATGAAAATGCCTGAAACGGCACGATACACGGCTCTTGTAGCGAAAGATACAACTCAAGCTGCATCAGATATGTCAAAAGTTTTACAAATGGATATTGAGGCAGAAGCACAAAAGCCTGCTGCGCAGATGCCAAATGCAAGTGCAAGTGCAAGTGTAAGTGCATATGGCTTGTTCTCCAAAGAGTTTCTCCATCGCCATGGAACTCACTTACTTGGAACTACAAGTACTTGGTTTTTACTTGATATTGCATTTTACAGTCAAAACTTGTTCCAAAAAGATATCTTCAGTTCAATTGGATGGATTCCTCCAGCAGCCACAATGAATGCAATTGAAGAAGTTTTCAGAATAGCAAGGGCTCAAACACTCATTGCCCTCTGCAGTACTGTCCCTGGCTACTGGTTCACAGTAGCTTTCATTGACAAAATGGGAAGATTTGCCATTCAACTCATGGGATTCTTCTTCATGACAGTCTTCATGTTTGCTTTAGCCATTCCATACCATCATTGGACTCTAAAGGACAATCGAATTGGCTTTGTTGTCCTCTACTCACTAACATTTTTCTTTGCAAATTTTGGCCCAAATGCAACCACTTTCGTTGTTCCAGCTGAAATCTTCCCAGCACGACTCCGTTCTACTTGCCACGGTGTATCATCAGCATCTGGAAAGCTTGGAGCTATGGTGGGTGCATTTGGTTTTCTATATTTGGCTCAAAACCAAGACAAGAACAAAACTGATGCAGGATATCCTCCTGGCATTGGTATCAAGAACTCGCTTCTATTGTTAGGTGGACTTAACTTTTTGGGAATTTTGTTTACTTTTCTCGTGCCTGAAGCAAAAGGAAAATCGTTGGAAGAGATGTCAGGTGAGAATGAAGATGGAACCATTGGAGAATTAGGAGGCCAACCATCTACCACTAACGAAACAGTCTCACATGTTTAA 1638 42.0 MGKDQLEVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAPKPGTLPPNVAAAVNGVAFCGTLAGQLFFGWLGDKMGRKRVYGMTLMLMVICSIGSGLSFGHNSQSVMTTLCFFRFWLGFGIGGDYPLSATIMSEYSNKETRGAFIAAVFAMQGFGILGGGIFAIIISLAFKAKFDSPPYAVDPIKSTVPQADYIWRIVLMVGALPAALTYYWRMKMPETARYTALVAKDTTQAASDMSKVLQMDIEAEAQKPAAQMPNASASASVSAYGLFSKEFLHRHGTHLLGTTSTWFLLDIAFYSQNLFQKDIFSSIGWIPPAATMNAIEEVFRIARAQTLIALCSTVPGYWFTVAFIDKMGRFAIQLMGFFFMTVFMFALAIPYHHWTLKDNRIGFVVLYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGVSSASGKLGAMVGAFGFLYLAQNQDKNKTDAGYPPGIGIKNSLLLLGGLNFLGILFTFLVPEAKGKSLEEMSGENEDGTIGELGGQPSTTNETVSHV 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17615975 17617612 + Lsi05G010140.1 Lsi05g01014 663506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01014 545 SUPERFAMILY MFS general substrate transporter 11 520 IPR036259 -
Lsi05g01014 545 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 1 526 - -
Lsi05g01014 545 TIGRFAM 2A0109: phosphate:H+ symporter 11 522 IPR004738 GO:0005315|GO:0006817|GO:0016021
Lsi05g01014 545 MobiDBLite consensus disorder prediction 530 545 - -
Lsi05g01014 545 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-7-RELATED 1 526 - -
Lsi05g01014 545 MobiDBLite consensus disorder prediction 517 545 - -
Lsi05g01014 545 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 513 IPR020846 GO:0022857
Lsi05g01014 545 CDD MFS_PhT 25 512 - -
Lsi05g01014 545 Pfam Sugar (and other) transporter 26 520 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lsi05g01014 545 Gene3D MFS general substrate transporter like domains 20 268 IPR036259 -
Lsi05g01014 545 Gene3D MFS general substrate transporter like domains 272 534 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01014 Lsi-Chr5:17615975 Lsi05g01034 Lsi-Chr5:17891068 0 dispersed
Lsi05g01012 Lsi-Chr5:17605290 Lsi05g01014 Lsi-Chr5:17615975 9.01E-151 proximal
Lsi05g01013 Lsi-Chr5:17605989 Lsi05g01014 Lsi-Chr5:17615975 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01014 K08176 - zju:107405539 905.59