Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01034 ATGGGAAAAGACCAATTAGAAGTACTAAATGCACTTGATGTAGCGAAAACACAATGGTACCATTTCACAGCAATCATAATTGCTGGAATGGGATTCTTCACTGATGCATATGATCTATTTTGCATATCTCTTGTCACAAAATTACTTGGACGTATATACTATCATGTTGATGGTGCACCAAAGCCAGGGACATTGCCTCCAAATGTTGCTGCTGCTGTTAATGGTGTGGCATTTTGTGGAACTCTAGCAGGCCAACTCTTTTTTGGCTGGTTGGGTGACAAAATGGGGAGAAAACGAGTTTATGGCATGACTCTAATGCTTATGGTTATATGCTCTATAGGCTCAGGCCTTTCCTTTGGCCACAATTCACAATCTGTCATGACTACTCTTTGCTTCTTTCGGTTTTGGCTCGGGTTTGGTATTGGTGGCGATTACCCTCTTTCGGCAACGATCATGTCGGAATACTCGAATAAGGAGACTCGTGGTGCATTCATTGCTGCAGTGTTTGCTATGCAAGGGTTTGGAATTTTGGGTGGAGGCATATTTGCCATTATCATCTCTTTGGCATTTAAAGCCAAGTTTGATTCTCCCCCTTATGCAGTCGATCCAATTAAATCAACTGTGCCACAAGCAGATTACATTTGGAGGATAGTTCTAATGGTTGGAGCTCTTCCTGCTGCTCTTACGTACTATTGGAGGATGAAAATGCCTGAAACGGCACGATACACGGCTCTTGTAGCGAAAGATACAACTCAAGCTGCATCAGATATGTCAAAAGTTTTAAAGATGGATATTGAGGCAGAAGCACAAAAGCCTGCTGCGCAGATGCCAAATGCAAGTGCAAGTGTAAGTGCATATGGCTTGTTCTCCAAAGAGTTTCTCCATCGCCATGGAACTCACTTACTTGGAACTACAAGTACTTGGTTTTTACTTGATATTGCATTTTACAGTCAAAACTTGTTCCAAAAAGATATCTTCAGTTCAATTGGATGGATTCCTCCAGCAGCCACAATGAATGCAATTGAAGAAGTTTTCAGAATAGCAAGGGCTCAAACACTCATTGCCCTCTGCAGTACTGTCCCTGGCTACTGGTTCACAGTAGCTTTCATTGACAAAATGGGAAGATTTGCCATTCAACTCATGGGATTCTTCTTCATGACAGTCTTCATGTTTGCTTTAGCCATTCCATACCATCATTGGACTCTAAAGGACAATCGAATTGGCTTTGTTGTCCTCTACTCACTAACGTTTTTCTTTGCGAATTTCGGCCCAAACGCAACCACTTTCGTTGTCCCAGCTGAAATCTTCCCAGCACGATTCCGTTCTACTTGCCACGGTATATCATCAGCATCTGGAAAGCTTGGAGCTATGGTGGGTGCATTTGGTTTTCTATATTTGGCTCAAAACCAAGACAAGAACAAAACTGAGGCAGGATATCCTCCTGGCATTGGTATCAAGAACTCGCTTCTATTGTTAGGTGGACTTAACTTTTTGGGAATTTTGTTTACTTTTCTCGTGCCTGAAGCAAAAGGAAAATCGTTGGAAGAGATGTCGGGCGAGAATGAAGATGGAACCATTGGAGAATTGGGGGGTCAACCAACTTCTAGCAATACAGTTTCACGTGTTTAA 1629 42.3 MGKDQLEVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAPKPGTLPPNVAAAVNGVAFCGTLAGQLFFGWLGDKMGRKRVYGMTLMLMVICSIGSGLSFGHNSQSVMTTLCFFRFWLGFGIGGDYPLSATIMSEYSNKETRGAFIAAVFAMQGFGILGGGIFAIIISLAFKAKFDSPPYAVDPIKSTVPQADYIWRIVLMVGALPAALTYYWRMKMPETARYTALVAKDTTQAASDMSKVLKMDIEAEAQKPAAQMPNASASVSAYGLFSKEFLHRHGTHLLGTTSTWFLLDIAFYSQNLFQKDIFSSIGWIPPAATMNAIEEVFRIARAQTLIALCSTVPGYWFTVAFIDKMGRFAIQLMGFFFMTVFMFALAIPYHHWTLKDNRIGFVVLYSLTFFFANFGPNATTFVVPAEIFPARFRSTCHGISSASGKLGAMVGAFGFLYLAQNQDKNKTEAGYPPGIGIKNSLLLLGGLNFLGILFTFLVPEAKGKSLEEMSGENEDGTIGELGGQPTSSNTVSRV 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17891068 17892696 - Lsi05G010340.1 Lsi05g01034 663526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01034 542 CDD MFS_PhT 25 510 - -
Lsi05g01034 542 Gene3D MFS general substrate transporter like domains 20 532 IPR036259 -
Lsi05g01034 542 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-7-RELATED 1 524 - -
Lsi05g01034 542 SUPERFAMILY MFS general substrate transporter 11 518 IPR036259 -
Lsi05g01034 542 Pfam Sugar (and other) transporter 26 518 IPR005828 GO:0016021|GO:0022857|GO:0055085
Lsi05g01034 542 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 511 IPR020846 GO:0022857
Lsi05g01034 542 TIGRFAM 2A0109: phosphate:H+ symporter 11 520 IPR004738 GO:0005315|GO:0006817|GO:0016021
Lsi05g01034 542 MobiDBLite consensus disorder prediction 528 542 - -
Lsi05g01034 542 MobiDBLite consensus disorder prediction 515 542 - -
Lsi05g01034 542 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 1 524 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01012 Lsi-Chr5:17605290 Lsi05g01034 Lsi-Chr5:17891068 9.23E-151 dispersed
Lsi05g01013 Lsi-Chr5:17605989 Lsi05g01034 Lsi-Chr5:17891068 0 dispersed
Lsi05g01014 Lsi-Chr5:17615975 Lsi05g01034 Lsi-Chr5:17891068 0 dispersed
Lsi05g01034 Lsi-Chr5:17891068 Lsi05g01728 Lsi-Chr5:24728682 0 dispersed
Lsi05g01034 Lsi-Chr5:17891068 Lsi05g01727 Lsi-Chr5:24715306 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01034 K08176 - zju:107405539 903.664