Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01037 ATGGATTTTTGGCTGCAGTCAAACAATATGAAGAGTAACGTTAAGATTAAAAGGGGGAGGAGCGCTGGAAGAGGGGTGAATATTAGGAAGATAATGAAGTGTTTATGTTCTGGAGAGAAAACAGCTAGGGATGATACGATTCCTGCAGCGGAATCGCCTTCGGCTTTTGAGAATTCAGCAAGTGGACACTCTTCACGGACTGGGGAGATCGTCAAGAAGCCAGAAATTGGCAATATAGAAGAAGCCGAGTCTTCGCTTCGTGAGAGTGGTTGTTTAAATTATGAGGAAGCAAGAGCATTGCTGGGTAGATATGAATATCAAAAAGGAAATATTGAAGCTGCTCTTCATGTATTTGAAGGAATAGACATCACTGCTATAACTAGTAAGATAATGATCTCCATAGCTAGGAGAGGAGACCATCCATGGAGACGATCACAAAATTTTACTGCCCCGCCAATGTCTATGCATGCTGTCAGTTTACTCTTGGAAGCCATCCTTCTGAAAGCAAAATCATTGCAAGGCCTTGGGAGGTTCGGAGTTTTGGGAATCTATTTCTTTTGTCAAACTCTTCAATGTGATTTTTTGATGAAATGCCTTACAACTCTGGTGTTGAGTTTTGGTTGGAATATGAAGATTCACTGTGATTTTCATTTTTCCGGATTGTCTGTAAAAAAGGGAAAAGACGAAGCTGCTCAATCTTGCAAAGTTATTCTGGACATACTTGAATCTTCATTTCCCGAAGGCTTGCCTGAAAACTTTGGTACTGATTGTAAATTGCAGGAGACAGTTACAAAGGCCGTGGAGCTGATACCAGAGTTATGGAAGCTAGCTGATGCTTCTCAAGAAGCGATCCTTTCATACCGGCGGGCACTTCTTCATCAGTGGAACCTTGATGCGGGAACCACTGCTCGAATTCAGAAAGAGTTCGCCATTTTTCTTCTGTACAGTGGATGTGAAGCTTGCCCTCCGAATCTCCGGTCCCAAATGGACAGCTCATTTGTACCAAAAAACAATATTGAAGAAGCTATACTCTTATTTATGATACTACTTAGAAAAGTTGTTCTTAAGAGGATTGATTGGGATCCATCAATCTTGGATCATCTCTCCTTTGCTCTAACAATATCAGGGGATACAAGAGCTTTAGCAGGTCAAATAGAGGAATTGCCTCCTGGGATTCTACATCGACAAGAAAGGTATCATGCTCTAGCTCTTTGTTACTATGGAGCCGGTGAAAACTTGACTGCTTTGAATCTGTTGAGGAAAGTGTTGGGTAGTCATGAGGATCCTAAATCGCTTCCCGCTTTATTGATGGCGTCGAAGATTTGTGGAGAGAATGGCGACCTTGCTGAAGAGGGAACGAGTTTTGCTCATAGAGCTCTTCAAAACTTGGATCATGGATGTGATCAATTGGAAGGTGTTGCCAATTGTTTGTTGGGTGTCTCACTGTCTGGATATTCTAAATCCGCCACTGCAGATTCCGATAAGTCCACCAGACAATCTGAGGCGATAGAGGCCTTGGAAGCTGCATGGAAGAAGACTAGAACGACTGACCCTAATGTTCTCTATCATTTGAGTCTTGAATATGCCAACGATAGGAAGTTAGATTCAGCACTTTATTATGCAAAGAAGTGTCTCAAGCTAGAAGGTGGATCTAATGTTAAAACTTGGTTACTACTGGCTAGGATTCTCTCAGCCCAAAAACGATTTACAGATAGCGAAAGTATTATAAATGCAGCTCTGGATCAGACAGGGAAATGGGAGCAAGCTGAGTTGCTTCGAACAAAAGCAAAGCTTCTAATTGCACAGGATGAGTTTAAAGGTGCTATTGAGACTTATAGTCAATTACTCGCTGTTTTTCAAGTTCAGAGTAAAAGTTTCAGTTTGGGAGATAAGAAACTACATAAGGTCTGTTTCATCTGTATTTCGTCTTTCCATCAGTTCATCTCTTATATTTTGAAAATGGTTTCCACTTATAGTTATTTCATGATTGATTTTCATAGCAGCAGAAATTATGCTAGAAGATTGCAATTGGAAGTGTGGCATGATCTAGCTCTAGTCTACATAAGGCTCTCACAGTGGCACGATGCCGAGGCCTGCCTTTCAAAGTCGAAGGCCATCTCTTCTCATTCGGCATCTAGATGTCATATTACAGATAAGAGGACCTTTATTACTTCACAGTTAGCTTCTCTTTTCTTTCGAACGGATGATTTTGAAGTTTCGCCTGCAAATTGTTCTAGGTTTCGTTTAACTTCCAATTGTGTAGTGATGCCTAAATTATGCTCATCTGAGGTTGGTATGCTTTATGAAGCAAAAGGCTTGTATAAAGAAGCTCTGAAAGATTTTATGGCTGCTCTGGACATTGATCCCATTCATGTCCCGAGCTTGGTCTCGTCTGCGGTGGTTATCAGACATCTTGGCCACCAATCGCATCCCGTCATTCGCAGCTTTTTGATGGATGCTCTACGGCTTGACCAGACGAACCATGCTGCATGGTACAATCTCGGGCTATTCTACAAATCAGAAGGAACCAAGTCTTCATTAGCAGAAGCTGTTGAATGTTTTGAGGCTGCAACTTTTCTTGAAGAGTCTGCTCCTGTTGAACCCTTTAGATAA 2613 41.6 MDFWLQSNNMKSNVKIKRGRSAGRGVNIRKIMKCLCSGEKTARDDTIPAAESPSAFENSASGHSSRTGEIVKKPEIGNIEEAESSLRESGCLNYEEARALLGRYEYQKGNIEAALHVFEGIDITAITSKIMISIARRGDHPWRRSQNFTAPPMSMHAVSLLLEAILLKAKSLQGLGRFGVLGIYFFCQTLQCDFLMKCLTTLVLSFGWNMKIHCDFHFSGLSVKKGKDEAAQSCKVILDILESSFPEGLPENFGTDCKLQETVTKAVELIPELWKLADASQEAILSYRRALLHQWNLDAGTTARIQKEFAIFLLYSGCEACPPNLRSQMDSSFVPKNNIEEAILLFMILLRKVVLKRIDWDPSILDHLSFALTISGDTRALAGQIEELPPGILHRQERYHALALCYYGAGENLTALNLLRKVLGSHEDPKSLPALLMASKICGENGDLAEEGTSFAHRALQNLDHGCDQLEGVANCLLGVSLSGYSKSATADSDKSTRQSEAIEALEAAWKKTRTTDPNVLYHLSLEYANDRKLDSALYYAKKCLKLEGGSNVKTWLLLARILSAQKRFTDSESIINAALDQTGKWEQAELLRTKAKLLIAQDEFKGAIETYSQLLAVFQVQSKSFSLGDKKLHKVCFICISSFHQFISYILKMVSTYSYFMIDFHSSRNYARRLQLEVWHDLALVYIRLSQWHDAEACLSKSKAISSHSASRCHITDKRTFITSQLASLFFRTDDFEVSPANCSRFRLTSNCVVMPKLCSSEVGMLYEAKGLYKEALKDFMAALDIDPIHVPSLVSSAVVIRHLGHQSHPVIRSFLMDALRLDQTNHAAWYNLGLFYKSEGTKSSLAEAVECFEAATFLEESAPVEPFR 870
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17918214 17922404 + Lsi05G010370.1 Lsi05g01037 663529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01037 870 Gene3D - 760 865 - -
Lsi05g01037 870 ProSiteProfiles TPR repeat profile. 758 791 IPR019734 GO:0005515
Lsi05g01037 870 PANTHER PROTEIN NPG1 640 717 IPR043376 -
Lsi05g01037 870 PANTHER PROTEIN NPG1 22 178 IPR043376 -
Lsi05g01037 870 Gene3D Tetratricopeptide repeat domain 337 741 IPR011990 GO:0005515
Lsi05g01037 870 SUPERFAMILY TPR-like 501 858 IPR011990 GO:0005515
Lsi05g01037 870 PANTHER PROTEIN NPGR2 22 178 - -
Lsi05g01037 870 SUPERFAMILY TPR-like 586 837 IPR011990 GO:0005515
Lsi05g01037 870 PANTHER PROTEIN NPGR2 228 634 - -
Lsi05g01037 870 PANTHER PROTEIN NPGR2 640 717 - -
Lsi05g01037 870 MobiDBLite consensus disorder prediction 52 66 - -
Lsi05g01037 870 SMART tpr_5 677 710 IPR019734 GO:0005515
Lsi05g01037 870 SMART tpr_5 589 622 IPR019734 GO:0005515
Lsi05g01037 870 SMART tpr_5 553 586 IPR019734 GO:0005515
Lsi05g01037 870 SMART tpr_5 828 864 IPR019734 GO:0005515
Lsi05g01037 870 SMART tpr_5 758 791 IPR019734 GO:0005515
Lsi05g01037 870 SMART tpr_5 518 551 IPR019734 GO:0005515
Lsi05g01037 870 MobiDBLite consensus disorder prediction 46 67 - -
Lsi05g01037 870 PANTHER PROTEIN NPG1 228 634 IPR043376 -
Lsi05g01037 870 PANTHER PROTEIN NPGR2 762 870 - -
Lsi05g01037 870 PANTHER PROTEIN NPG1 762 870 IPR043376 -
Lsi05g01037 870 Pfam Tetratricopeptide repeat 765 790 IPR019734 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01901 Lsi-Chr4:26172695 Lsi05g01037 Lsi-Chr5:17918214 5.77E-173 dispersed
Lsi05g01037 Lsi-Chr5:17918214 Lsi08g01530 Lsi-Chr8:23345845 1.72E-168 dispersed
Lsi05g01037 Lsi-Chr5:17918214 Lsi05g01751 Lsi-Chr5:24912925 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01037 K21843 - csv:101223229 1264.98