Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01053 ATGGCGAAAAAGAGGATGAAATCAATAACCCAGATTTTGTTTTGTGTGTTTTTGTACTGTTGTTTTGGTTTTTACACTGAGTGTTCTGCTTCTGGGTTTAGTGAAGAAGCATTGGCTTTGGTTTCGATTAAATCAGGGCTTGTTGATCCGTTGAAATGGCTCAGAGATTGGAAGTTGAGCGATGGAAATGGTAAGTTTGCAAAGCACTGTAATTGGACTGGAGTTTTTTGCAACTCGGATGGAGCTGTTGAGAAACTCAGCCTTTCTCGTATGAATCTTAGCGGCATTTTGTCGAACGACTTGCAGAAATTAACAAAGCTTACTTCTCTTGACTTGAGCGGCAATGGATTTTCCTCTTCTTTGCCAAAATCCATTGGCAATCTCACTTCCCTCAAGAGTTTTGATGTGAGTCAAAACTATTTCGTCGGTGAAATCCCGATGGGGTTTGGAGGGATGGTTGGATTGACGAATTTCAATGCCTCAAGCAACAATCTCTGTGGTTTTATCCCTGAGGATCTTGGAAATGCAACTCTACTGGAGATTTTGGATCTCCGGGGGAGTTTTCTTGAAGGGTCAATTCCCATATCTTTCAAGAACTTGCAGAAGTTGAAGTTTCTTGGACTTTCTGGGAACAATCTGACCGGTCGAATCCCGGCCGAGATCGGTCAGATGTCGTCATTAGAGACTGTTATTATTGGATACAATGAGTTTGAAGGAGGGATTCCATCAGAAGTTGGAAATCTCACTAATCTGAAGTATCTTGATTTGGCTGTGGGAAATCTTGGTGGTGGGATTCCTGCTGAGCTTGGGAGTCTTAAACAACTTGAGACATTGTTCCTTTATAAGAACGAATTCGAAGATCGAATTCCGTCGTCGATTGGCAATGTTACTTCATTAGTGTTTCTTGATCTTTCAGACAACAAGTTAACAGGGGAAATTCCAGCTGAGGTTGCTGATCTGAAGAACTTGCAGCTGCTGAATTTGATGTGTAACAAGCTGTCTGGTGAAGTGCCTCCAGGGATAGGAGAGCTGACAAAATTGCAGGTTCTAGAGCTCTGGAACAACTCTTTTTCGGGCCAATTGCCTGGCGATCTCGGTAAGAGCTCAGAGTTGGTATGGTTGGATGTCTCATCCAATTCATTCTCTGGTCCAATTCCTGCTTCTTTATGTAATAAAGGCAATCTAACCAAGCTCATCCTTTTCAACAATGCCTTTTCGGGTTCGATTCCGATTGGATTGTCATCGTGTTACTCGCTCGTTCGTGTTCGAATGCAGAACAATCTGCTATCTGGTACAATTCCAATTGGTTTTGGAAAGCTTGGGAAGCTTCAGAGACTAGAATTAGCAAACAACAGTCTCTTTGGTAGTATCCCAAATGATATTTCATCTTCTACATCCCTTTCTTTTATTGATCTCTCTGAAAATGACCTCCATTCTTCTCTTCCTTCCTCAATTCTTTCCATTCCAAATCTTCAAACTTTTATAGTCTCTGACAATAACTTACAAGGTGAAATCCCAGATCAGTTTCAGGAATGTCCTGCACTTTCTCTTCTTGATCTCTCTTCAAACCATTTCACAGGAAGCATTCCAGAAAGCATTGCTTCATGTGAGAGATTGGTAAATCTGAATCTTAGAAACAACCAGTTAACTGGAGAAATACCAAAACAGATTGCAAATATGCCTTCATTGTCTGTCCTGGATCTATCCAACAACTCTCTTACTGGTAGAATACCCGATAATTTCGGTATATCTCCCGCACTCGAATCGCTTAATGTATCATACAATAAGCTTGAGGGTCCAGTGCCATTAAATGGTGTGTTAAGAACAATCAATCCAAGTGATCTTCAGGGCAATGCTGGTTTATGTGGAGCTGTCCTACCCCCATGTTCACCAAATTCAGCATTTACATCAGGGCATGGGAACTCGCACACGTCACACATTATTGCCAGTTGGATCATCGGAGTATCTGGACTTTTAGCAATCTGTATCACTCTTTTTGGTGTTCGATCGTTGTACAAACGGTGGTACTCAAGCGGAAATTGCTTTGAAGGGAGATATGAAATGGGTGGTGGAGATTGGCCATGGAGATTGATGGCATTCCAAAGGCTTGGATTCTCAAGCAGTGACATTTTGACTTGCATCAAGGAATCAAATGTGATTGGAATGGGAGCAACTGGGATTGTGTATAAAGCTGAAATGCCACAACTAAAGACAGTTGTGGCAGTCAAAAAGCTGTGGAGATCACAACCAGATCTTGAAATTGGAAGTAGTGAAGGTCTAGTGGGAGAAGTGAATTTGCTGGGAAAGTTAAGGCACAGGAACATAGTTCGTTTAGTCGGATTTATGCATAACGATGCCGATGTAATGATCATCTATGAGTTTATGCAAAATGGGAGCCTTGGAGAAGCCTTACATGGCAAACAAGCAGGGAGGCTGCTTGTGGACTGGGTTTCAAGATACAACATAGCAATTGGAGTTGCACAAGGGTTAGCTTATCTCCATCACGATTGCAACCCACCCATCATTCATCGCGACGTTAAGCCAAATAATATACTTCTCGATTCAAATCTCGAAGCACGGTTGGCTGATTTCGGTTTGGCACGGATGATGGCTCGAAAGAACGAGACGGTTTCAATGGTAGCTGGATCCTACGGCTACATTGCACCTGAATATGGATACACTTTAAAGGTGGATGAAAAGATTGACATTTACAGCTTTGGCGTCGTTCTTTTAGAGCTCCTGACAGGAAAGAAGCCATTAGACCCCGAGTTCGGGGAATCTGTAGACATTGTTGAATGGATAAAAAGGAAAGTTAGGGACAATAGGTCTTTAGAAGAAGCATTAGATCCCAATCTGGGAAATTTCAAGCATGTTCAGGAAGAAATGCTGTTTGTTCTTAGAATAGCACTTCTCTGCACTGCAAAGCATCCAAAAGACAGGCCCTCCATGAGAGATATAATAACAATGCTTGGAGAGGCAAAACCAAGGAGAAAAAGCAACAGTGGCAATGAAGGATTTGGAACTAACAAAGAGAAGCCAGTTTTCAGCACTTCACCTGTAAATGGTCTTCTGTAA 3075 42.05 MAKKRMKSITQILFCVFLYCCFGFYTECSASGFSEEALALVSIKSGLVDPLKWLRDWKLSDGNGKFAKHCNWTGVFCNSDGAVEKLSLSRMNLSGILSNDLQKLTKLTSLDLSGNGFSSSLPKSIGNLTSLKSFDVSQNYFVGEIPMGFGGMVGLTNFNASSNNLCGFIPEDLGNATLLEILDLRGSFLEGSIPISFKNLQKLKFLGLSGNNLTGRIPAEIGQMSSLETVIIGYNEFEGGIPSEVGNLTNLKYLDLAVGNLGGGIPAELGSLKQLETLFLYKNEFEDRIPSSIGNVTSLVFLDLSDNKLTGEIPAEVADLKNLQLLNLMCNKLSGEVPPGIGELTKLQVLELWNNSFSGQLPGDLGKSSELVWLDVSSNSFSGPIPASLCNKGNLTKLILFNNAFSGSIPIGLSSCYSLVRVRMQNNLLSGTIPIGFGKLGKLQRLELANNSLFGSIPNDISSSTSLSFIDLSENDLHSSLPSSILSIPNLQTFIVSDNNLQGEIPDQFQECPALSLLDLSSNHFTGSIPESIASCERLVNLNLRNNQLTGEIPKQIANMPSLSVLDLSNNSLTGRIPDNFGISPALESLNVSYNKLEGPVPLNGVLRTINPSDLQGNAGLCGAVLPPCSPNSAFTSGHGNSHTSHIIASWIIGVSGLLAICITLFGVRSLYKRWYSSGNCFEGRYEMGGGDWPWRLMAFQRLGFSSSDILTCIKESNVIGMGATGIVYKAEMPQLKTVVAVKKLWRSQPDLEIGSSEGLVGEVNLLGKLRHRNIVRLVGFMHNDADVMIIYEFMQNGSLGEALHGKQAGRLLVDWVSRYNIAIGVAQGLAYLHHDCNPPIIHRDVKPNNILLDSNLEARLADFGLARMMARKNETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSFGVVLLELLTGKKPLDPEFGESVDIVEWIKRKVRDNRSLEEALDPNLGNFKHVQEEMLFVLRIALLCTAKHPKDRPSMRDIITMLGEAKPRRKSNSGNEGFGTNKEKPVFSTSPVNGLL 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18048728 18052561 - Lsi05G010530.1 Lsi05g01053 663545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01053 1024 ProSitePatterns Protein kinases ATP-binding region signature. 720 744 IPR017441 GO:0005524
Lsi05g01053 1024 MobiDBLite consensus disorder prediction 1001 1024 - -
Lsi05g01053 1024 Gene3D Ribonuclease Inhibitor 290 378 IPR032675 -
Lsi05g01053 1024 Pfam Leucine rich repeat 489 549 IPR001611 GO:0005515
Lsi05g01053 1024 MobiDBLite consensus disorder prediction 991 1024 - -
Lsi05g01053 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 841 853 IPR008271 GO:0004672|GO:0006468
Lsi05g01053 1024 SMART serkin_6 714 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01053 1024 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 16 1004 - -
Lsi05g01053 1024 SUPERFAMILY Protein kinase-like (PK-like) 712 990 IPR011009 -
Lsi05g01053 1024 Pfam Leucine Rich Repeat 563 581 IPR001611 GO:0005515
Lsi05g01053 1024 Pfam Leucine Rich Repeat 442 462 IPR001611 GO:0005515
Lsi05g01053 1024 Gene3D Ribonuclease Inhibitor 187 289 IPR032675 -
Lsi05g01053 1024 SMART LRR_typ_2 440 464 IPR003591 -
Lsi05g01053 1024 SMART LRR_typ_2 200 224 IPR003591 -
Lsi05g01053 1024 SMART LRR_typ_2 344 368 IPR003591 -
Lsi05g01053 1024 SMART LRR_typ_2 560 584 IPR003591 -
Lsi05g01053 1024 SMART LRR_typ_2 104 128 IPR003591 -
Lsi05g01053 1024 SMART LRR_typ_2 296 320 IPR003591 -
Lsi05g01053 1024 SMART LRR_typ_2 272 295 IPR003591 -
Lsi05g01053 1024 Pfam Protein kinase domain 716 987 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01053 1024 Gene3D Ribonuclease Inhibitor 379 633 IPR032675 -
Lsi05g01053 1024 Gene3D Phosphorylase Kinase; domain 1 713 798 - -
Lsi05g01053 1024 PRINTS Leucine-rich repeat signature 299 312 - -
Lsi05g01053 1024 PRINTS Leucine-rich repeat signature 560 573 - -
Lsi05g01053 1024 SUPERFAMILY RNI-like 85 391 - -
Lsi05g01053 1024 SUPERFAMILY RNI-like 289 599 - -
Lsi05g01053 1024 Pfam Leucine rich repeat N-terminal domain 35 78 IPR013210 -
Lsi05g01053 1024 PANTHER UNNAMED PRODUCT 16 1004 - -
Lsi05g01053 1024 Pfam Leucine Rich repeat 104 118 IPR001611 GO:0005515
Lsi05g01053 1024 ProSiteProfiles Protein kinase domain profile. 714 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01053 1024 Gene3D Ribonuclease Inhibitor 32 186 IPR032675 -
Lsi05g01053 1024 Gene3D Transferase(Phosphotransferase) domain 1 799 1011 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02324 Lsi-Chr4:30444518 Lsi05g01053 Lsi-Chr5:18048728 6.63E-159 dispersed
Lsi05g00800 Lsi-Chr5:11817984 Lsi05g01053 Lsi-Chr5:18048728 0 dispersed
Lsi05g01053 Lsi-Chr5:18048728 Lsi07g00100 Lsi-Chr7:1134112 0 dispersed
Lsi06g00394 Lsi-Chr6:4325939 Lsi05g01053 Lsi-Chr5:18048728 1.70E-64 dispersed
Lsi06g01606 Lsi-Chr6:26428106 Lsi05g01053 Lsi-Chr5:18048728 9.11E-09 dispersed
Lsi05g01053 Lsi-Chr5:18048728 Lsi01g00847 Lsi-Chr1:6791970 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83649 PF00069 Pkinase 3.50E-47 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01053 - - csv:101222597 1921.75