Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01054 ATGGATTTCAATACCAAAATGGGTTTTCTTCTTTTCCTCTGTTTTCTTTCAATTCAAGTTCAACCAAACACTTCCACTCTTCAAACTTACATCATTCAACTCCACCCACATGGCTTAACCGCCTCTCTGTTTGATTCTAAGCTTCAATGGCATCTTTCTTTTCTTGAACAAACTCTTTCTGTTGAAGAAGACTCTTCTTCTCGCTTGCTTTACTCTTATTCTAATGCCATGGAAGGATTTGCAGCTCAGTTATCTGAAACTGAGCTTGAGTATTTGAAGAAGTTGCCTGATGTAGTGGCTGTTAGAGCTGACAGAAAGTATCAAATTCAGACGACTTACTCTCATAAATTCTTGGGGCTTAGTGTAGGCAGACAAGGTGTTTGGCAAAAGTCCTCAATGGGCCAAGGGGCAATAGTTGGGGTTCTTGACACTGGAGTTTGGCCTGAGAGTCCAAGCTTTAGTGATTCCAAAATGCCCCCAATTCCACAAAAATGGCGAGGGGCTTGCCAAGAAGGGCAAGATTTTAATTCCTCTAATTGTAACAGGAAACTCATTGGTGCCAAATTCTTTATCAAAGGACATCATGTGGCTTCTTCGTCATCGCCGCCTTCCGATATTGTCACGGAGTACGTCTCCCCAAGAGACTCTCATGGTCATGGGACTCACACGTCTTCTACAGCTGCAGGAGCTTCGGTTGCTGAAGCGAGTGTTTTCGGTAATGGAGCTGGTGTGGCACAAGGGATGGCCCCGGGAGCCCACATTGCGGTGTACAAGGTTTGCTGGTTCAGTGGCTGTTATAGCTCTGATATTGTAGCAGCCATGGATTCTGCAATAAGAGATGGTGTTGACATTCTCTCCCTTTCGCTTGGTGGCTTCCCACTTCCGTTTTTCGACGACAGCATTGCCATTGGCAGTTTTCGAGCAATGCAGCATGGCATCTCAGTTGTTTGTGCAGCAGGAAACAATGGTCCAACTCAAAGCTCTGTTGCCAATGTAGCTCCTTGGATCACCACCATCGGTGCGGGCACACTCGACCGAAGATTCCCAGCTATAGTTCGACTAAGCAATGGAGAAGCCATATACGGCGAATCAATGTACCCTGGAAACAAGTTCAAGCAAGCTACCAAGGAGCTTGAAGTGGTTTATTTGACTGGAGGGCAAATGGGAGGTGAGCTTTGTTTAAAAGGGTCACTTCCACGAGAACAAGTACAAGGCAAAATGGTGGTTTGCGACCGTGGCGTCAACGGCAGATCCGAAAAGGGGCAAATTGTAAAGGAATCTGGAGGTGCTGCTATGATCCTTGCAAATTCAGAGATAAATCTAGAGGAAGACTTGGTTGATGTTCATGTTTTGCCAGCCACTTTGATTGGATTTGCAGAGGCAAATCGGTTAAAAGCTTATATTAACACCACAACCAATCCAAAAGCCAGAATCCAATTTGGAGGAACTGTGATTGGAAGATCAAGAGCTCCCTCTGTAGCTCAGTTCTCATCTAGAGGTCCAAGCCTCTCTAATCCTTCAACTCTCAAACCTGATGTAATTGCTCCTGGGGTCAACATTATAGCAGCTTGGCCTCAAAATATTGGTCCAACTGGCCTTCCAGAAGATTCTAGAAGATCAAACTTCACTGTCATGTCAGGAACCTCCATGGCTTGTCCTCATGTCAGTGGAATTGCAGCTCTAATCCATTCAGCTCATCCAAAATGGACACCTGCAGCTATCAAATCAGCCATTATGACAACTGCTGATGTTACTGATCATTTTGGGAAACCAATTCTTGATGGCAACAAACCAGCTGGTGTTTTTGCAATGGGAGCTGGTCATGTAAACCCAACAAAAGCAATAGATCCTGGTTTGATCTATGATATCAAACCATATGAATATATCATTCATCTTTGTGCTCTTGGATACACTCATTCAGAAATCTTCATTATCACCCACATGAATGTGAGCTGCCACAAAGTTCTGCAGATGAACAAAGGCTTCACCCTCAACTATCCCTCAATGTCTGTCATTTTTAAGCATGGAACGACGAGTAAGATGGTTTCGAGACGGTTGACGAATGTCGGGAGCTCGAATTCCATCTACGAAGTGGAAGTAGCTGCACCCGAAGGAGTGAAAGTTCGAGTTAAGCCTCGGCGCTTGGTGTTTAAACATGTGAATCAAAGTTTGAATTATAAGGTATGGTTTATGTCTGAGAAAGGAAAGGAAGGAAGAAAAGTGAGCTCTACAGAAGGGCATTTGACATGGTTTCATACTGAGAACAGCAAATATAGAGTTAGAAGCCCAATTGTAGTGACTTGGAAGAACTAA 2313 44.19 MDFNTKMGFLLFLCFLSIQVQPNTSTLQTYIIQLHPHGLTASLFDSKLQWHLSFLEQTLSVEEDSSSRLLYSYSNAMEGFAAQLSETELEYLKKLPDVVAVRADRKYQIQTTYSHKFLGLSVGRQGVWQKSSMGQGAIVGVLDTGVWPESPSFSDSKMPPIPQKWRGACQEGQDFNSSNCNRKLIGAKFFIKGHHVASSSSPPSDIVTEYVSPRDSHGHGTHTSSTAAGASVAEASVFGNGAGVAQGMAPGAHIAVYKVCWFSGCYSSDIVAAMDSAIRDGVDILSLSLGGFPLPFFDDSIAIGSFRAMQHGISVVCAAGNNGPTQSSVANVAPWITTIGAGTLDRRFPAIVRLSNGEAIYGESMYPGNKFKQATKELEVVYLTGGQMGGELCLKGSLPREQVQGKMVVCDRGVNGRSEKGQIVKESGGAAMILANSEINLEEDLVDVHVLPATLIGFAEANRLKAYINTTTNPKARIQFGGTVIGRSRAPSVAQFSSRGPSLSNPSTLKPDVIAPGVNIIAAWPQNIGPTGLPEDSRRSNFTVMSGTSMACPHVSGIAALIHSAHPKWTPAAIKSAIMTTADVTDHFGKPILDGNKPAGVFAMGAGHVNPTKAIDPGLIYDIKPYEYIIHLCALGYTHSEIFIITHMNVSCHKVLQMNKGFTLNYPSMSVIFKHGTTSKMVSRRLTNVGSSNSIYEVEVAAPEGVKVRVKPRRLVFKHVNQSLNYKVWFMSEKGKEGRKVSSTEGHLTWFHTENSKYRVRSPIVVTWKN 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18063681 18065993 - Lsi05G010540.1 Lsi05g01054 663546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01054 770 Pfam Fibronectin type-III domain 664 766 IPR041469 -
Lsi05g01054 770 PRINTS Subtilisin serine protease family (S8) signature 134 153 IPR015500 -
Lsi05g01054 770 PRINTS Subtilisin serine protease family (S8) signature 546 562 IPR015500 -
Lsi05g01054 770 PRINTS Subtilisin serine protease family (S8) signature 215 228 IPR015500 -
Lsi05g01054 770 Pfam Subtilase family 134 585 IPR000209 GO:0006508|GO:0008236
Lsi05g01054 770 ProSitePatterns Serine proteases, subtilase family, serine active site. 547 557 IPR023828 -
Lsi05g01054 770 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.2 24 767 - -
Lsi05g01054 770 CDD Peptidases_S8_3 107 583 IPR034197 -
Lsi05g01054 770 SUPERFAMILY Subtilisin-like 110 619 IPR036852 GO:0004252|GO:0006508
Lsi05g01054 770 Gene3D - 632 768 - -
Lsi05g01054 770 SUPERFAMILY Protease propeptides/inhibitors 52 109 - -
Lsi05g01054 770 ProSiteProfiles Serine proteases, subtilase domain profile. 112 615 - -
Lsi05g01054 770 Pfam Peptidase inhibitor I9 29 109 IPR010259 -
Lsi05g01054 770 Gene3D Peptidase S8/S53 domain 137 628 IPR036852 GO:0004252|GO:0006508
Lsi05g01054 770 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 24 767 IPR045051 -
Lsi05g01054 770 CDD PA_subtilisin_like 352 478 - -
Lsi05g01054 770 Gene3D - 345 485 - -
Lsi05g01054 770 Pfam PA domain 399 464 IPR003137 -
Lsi05g01054 770 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 15 110 IPR037045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01054 Lsi-Chr5:18063681 Lsi09g00343 Lsi-Chr9:3549223 0 dispersed
Lsi05g01054 Lsi-Chr5:18063681 Lsi06g00340 Lsi-Chr6:3784647 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01054 - - csv:101222839 1474.14