Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01060 ATGGCAGAAATGGCCTGCTCCGCCGCCGACCTCCACCACCTGCTCGGCGGCTCAGCCAATGCCACGGCCGTTGCCGAGTACATTTGTAGCCGATTCGATTCCATCTCGACGAAATTCGTGGACACGAGCTACGCGGTTGACAACACATACCTTCTGTTTTCAGCTTACCTTGTATTTGCAATGCAGCTTGGATTTGCAATGCTTTGTGCTGGATCAGTTAGAGCCAAGAACACAATGAATATTATGTTAACAAATGTTCTTGATGCAGCTACTGGTGGAATATTTTATTATGTGTTTGGGTTTGCTTTGGCATTTGGAACACCTTCAAATTCCTTCATTGGGCATCATTATTTTGGCCTTTCACAGTTCCCTTCTTCTTCATTTGATTATGGGTTCTTTCTGTTTCAATGGGCTTTTGCAATTGCTGCTGCTGGGATTACAAGTGGTTCCATTGCTGAAAGAACTCAGTTTGTTGCTTATTTGATCTATTCCTCTGTTTTAACTGGTTTGGTATATCCAATCGTTTCTCATTGGTTTTGGTCGTCCGATGGGTGGGGCAGTGCAGCTCGGTCCGATAACCTCCTATTTGGCTCCGGCGTGATCGACTTCGCCGGCTCCGGCGTCGTCCACATGGTCGGCGGCATCGCCGGTTTATGGGGCGCTGTCATAGAAGGCCCTCGAATCGGCCGGTTCGATCACGCCGGCCGGTCCGTCGCTCTCCGTGGCCACAGCGGCACATTGGTGGTTCTCGGCACTTTCCTCCTCTGGTTCGGCTGGTACGGCTTTAACCCCGGTTCATTCCTCAACATCCTCAAAGCCTACGGCCACCCCGCCGCCCCTTATTACGGCCAATGGAGCGCCATTGGCCGCACCGCCGTCACCACCACTCTCGCCGGCTGCACAGCAGCACTAACCACACTCTTCGGCAAACGCCTCCTCGTCGGCCATTGGAATGTCACCGACGTTTGCAACGGTCTATTAGGCGGATTCGCCGCCATAACCTCCGGCTGCGCGGTGGTGGATCCATGGGCAGCGATTGTGTGTGGGTTTTTCTCAGCCTGGGTTTTAATCGGATTCAACAAACTAGCTGAGAAAATGAAGTACGACGATCCATTAGAGGCAGCGCAATTGCACGGCGGATGTGGAGCTTGGGGGATTTTGTTCACAGGGTTATTTGCAAAACAGGCTTATGTTAACGAGATCTATCCAGGGGTGCCGGAGAGGCCGTACGGGCTGCTGATGGGTGGCGGCGGGAGGCTGTTAGCGGCTCATTTGGTACAAATTTTGTCGATTGTTGGTTGGGTTAGTGTAACGATGGGGCTTGTTTTTTGGCTGTTGCATAAGTTTCAGTTGCTGAGGATTACGCCGGAGGAGGAGATGGCCGGAATGGACTTGACGAGCCACGGGGGTTTGGCTTATGTGTATAATGATGAAGAGAAGCTTTGA 1446 51.94 MAEMACSAADLHHLLGGSANATAVAEYICSRFDSISTKFVDTSYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFYYVFGFALAFGTPSNSFIGHHYFGLSQFPSSSFDYGFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGLVYPIVSHWFWSSDGWGSAARSDNLLFGSGVIDFAGSGVVHMVGGIAGLWGAVIEGPRIGRFDHAGRSVALRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGHPAAPYYGQWSAIGRTAVTTTLAGCTAALTTLFGKRLLVGHWNVTDVCNGLLGGFAAITSGCAVVDPWAAIVCGFFSAWVLIGFNKLAEKMKYDDPLEAAQLHGGCGAWGILFTGLFAKQAYVNEIYPGVPERPYGLLMGGGGRLLAAHLVQILSIVGWVSVTMGLVFWLLHKFQLLRITPEEEMAGMDLTSHGGLAYVYNDEEKL 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18115979 18119081 + Lsi05G010600.1 Lsi05g01060 663552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01060 481 Pfam Ammonium Transporter Family 50 473 IPR024041 GO:0008519|GO:0016020|GO:0072488
Lsi05g01060 481 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
Lsi05g01060 481 TIGRFAM amt: ammonium transporter 47 473 IPR001905 GO:0008519|GO:0016020|GO:0072488
Lsi05g01060 481 PANTHER AMMONIUM TRANSPORTER 1 480 - -
Lsi05g01060 481 Gene3D Ammonium transporter AmtB like domains 26 481 IPR029020 -
Lsi05g01060 481 SUPERFAMILY Ammonium transporter 44 454 - -
Lsi05g01060 481 PANTHER AMMONIUM TRANSPORTER 1 480 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01060 Lsi-Chr5:18115979 Lsi11g00907 Lsi-Chr11:12336294 0 dispersed
Lsi05g01060 Lsi-Chr5:18115979 Lsi05g01783 Lsi-Chr5:25159224 0 wgd
Lsi05g01060 Lsi-Chr5:18115979 Lsi09g01170 Lsi-Chr9:18944306 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01060 K03320 - csv:101223077 912.138