Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01065 ATGTATGGCGTTACACAATCAACGATAATGGAGTTTTCAATCATCCTCACTTTCTTTCTTCCCTTCTTCTTCTTCATTTGGAAGCTTAAATCCAAGCCAAGAACTACGTCGAAGCTACCTCCGGGACCAAAGCCTCTGCCACTCATCGGAAACCTCTTGGATCTCGGCGACAAGCCTCACAAGTCGCTCACCGCCATGGCTAAGGTACATGGTCCAATTATGAGTCTGAAACTCGGACGAGTTACAACCGTCGTGGTTTCTTCTTCCGTCATGGCTAAAGAGGTTTTACAAACAAACGACCAGCTTTTGTGTAACAGAGCCATTCCAGATGCGCTGAAAGCTCACGGTCATGACGAAACTGGATTTGCATGGATTTCTGTTTCTCCTCTCTGGAGGAACTTTCGCAAAATTTGCAACAATATGTTATTCACTGCAAAAATTCTGGACGCCAACGAGAATCTTCGTCGGAAGAAAGTGGAAGAGCTTGTGGAGATTGTTCGGAAAAGTGCGTTGAAAGGCGAGGCAGTGGATGTAGGGAGGTTAGTGTTTGCGACTACGTTGAATTTACTCTCCAACACAATTTTCTCTGTTGATTTAGCAGATCCGAATTCTGAATTAGCAAGAGAGTTTAAGAAATACGTGTCGGGAATGATGGAAGAAGCTGGAAAACCAAATTTAAGTGATTATTTCCCTGTGTTGAAGAAGCTTGATGTTCAAGGAAATAGGAAGAGGATGACGATTCATATGGGAAATGTGTTAAATTTTTTAGACTCAATGATTAAAGAGAGGGTGAAACAGGAAGAATTGAATCCTGATTCTGTTCCAAACAACGATATATTGCATTATCTTCTCAAGAACGAAGAGATTAACGCCAAAATCAATCAAAATCAAATGCAACATTTACTACTAGTATTGTTCTCAGCTGGCTCAGATACAACTTCATCGACATTGCAATGGGCAATGGGGGAGCTATTGAGAAATCCAGAGAAATTAACGAAAGCTCAAGCAGAAATTAGGCAAGTTTTGGCGAAGAACAAACCAGTGGAGGAAGCAGACATTTCGAGACTGCCATATCTACAAGCGGTGGTGAAGGAGACTTTCCGATTGCATCCAGCAGCTCCATTGTTACTACCGCGTAAGGCGCAAGAAGATGTTGAAATTGGAGGTTTCACAATCCCTAAAGATGCTCAGATTTATGTAAATACATGGGCGATTGGAAGAGATCCAATGAGCTGGGAGAATCCAGAATCGTTTGAACCGGAGAGGTTTCTGGGATCGGAAATTGATGTCAGAGGGCGGAGCTTCGAGCTGCTTCCGTTCGGCGGAGGGCGGAGGATTTGCCCTGGACTTCCATTGGCCATGAGAATGCTGCATTTAATGTTGAGTTCTTTAATTAGTTTCTTCGATTGGAAGGTTGAAGATGGATTTGAGATTATCAGTCACATGACGAGATGCTCCAGTATCGATAATCTACTCAATATGTATTCGTTGAACAACGTCAATCTATAA 1509 42.61 MYGVTQSTIMEFSIILTFFLPFFFFIWKLKSKPRTTSKLPPGPKPLPLIGNLLDLGDKPHKSLTAMAKVHGPIMSLKLGRVTTVVVSSSVMAKEVLQTNDQLLCNRAIPDALKAHGHDETGFAWISVSPLWRNFRKICNNMLFTAKILDANENLRRKKVEELVEIVRKSALKGEAVDVGRLVFATTLNLLSNTIFSVDLADPNSELAREFKKYVSGMMEEAGKPNLSDYFPVLKKLDVQGNRKRMTIHMGNVLNFLDSMIKERVKQEELNPDSVPNNDILHYLLKNEEINAKINQNQMQHLLLVLFSAGSDTTSSTLQWAMGELLRNPEKLTKAQAEIRQVLAKNKPVEEADISRLPYLQAVVKETFRLHPAAPLLLPRKAQEDVEIGGFTIPKDAQIYVNTWAIGRDPMSWENPESFEPERFLGSEIDVRGRSFELLPFGGGRRICPGLPLAMRMLHLMLSSLISFFDWKVEDGFEIISHMTRCSSIDNLLNMYSLNNVNL 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18143727 18156707 + Lsi05G010650.1 Lsi05g01065 663557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01065 502 Pfam Cytochrome P450 40 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01065 502 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 10 477 - -
Lsi05g01065 502 PRINTS P450 superfamily signature 447 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01065 502 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01065 502 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01065 502 PRINTS P450 superfamily signature 361 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01065 502 Gene3D Cytochrome P450 25 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01065 502 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01065 502 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01065 502 PRINTS E-class P450 group I signature 360 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01065 502 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01065 502 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01065 502 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01065 502 PRINTS E-class P450 group I signature 401 425 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01065 502 SUPERFAMILY Cytochrome P450 40 478 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01065 502 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
Lsi05g01065 502 PANTHER CYTOCHROME P450 FAMILY MONOOXYGENASE 10 477 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01063 Lsi-Chr5:18135369 Lsi05g01065 Lsi-Chr5:18143727 0 dispersed
Lsi05g01065 Lsi-Chr5:18143727 Lsi09g00350 Lsi-Chr9:3651984 0 dispersed
Lsi05g01064 Lsi-Chr5:18141106 Lsi05g01065 Lsi-Chr5:18143727 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01065 - - csv:101203044 716.457