Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01067 ATGCCTTTCTCGACTTTGCACCTTCTTTTGGTTCTTCATGCGTTCGATTTGCTTTTCTCTTGCTCAGGACAATCTTCAGTTTCACCACACATATACTTATCTCCTTCCTTACAGCCAAACCTGCAAACAACGACTACAGAAATGTCAACAGAGCATGCAAGGTTGGAGTCGATAAGTTTTTCATTTGTGCCTTCAAAGTTACGTGGTAACTGGATATTTAAGTCTTCTTTGGGACCATCTACTTCTCCTGCACCCTCTCCAGGTCCTAGGAGTGCACCCTTGCCTATCCGACATCATCGACGGCGTCGTGTACGACCTCATGTGGTTGCCCCTACCCCATCAAAAGACCAAGGTTGTGATCAAATATGCATGGAGCCCCTTACTGCAGCTCCCTTTGGTTCACCTTGTGGCTGTGTGTTTCCCATGAAAGTCAGACTTCTTCTGGATATAGCTCCATATGCTGTTTTTCCTGTGATGAACGAGCTTGAAAGTGAGATTGCAGTGGGAACGTACTTGGAGCAGAGTCAAGTGAAAATCATGGGTGCAAGTGCAGACAGTCAAAATCAAGGAAGAACTATGGTGGACATAAATTTAGTACCTCTAGGAGAGAAGTTTGATAATACAACTGCAGTACTGACTTACAGAAGGTTTTGGGATAAAAAAGTGCATTTAAATATGACGCTTTTTGGTGATTATGAAGTTGTCTACATCAGCTACCCAGGGATTCCTTCTTCACCGCCATATGGAGGGTACATGGGAAGTGCTCCTAGTGGAAGTGCGGGTGATCTTCCCATTACTGCAAATTTTGTTAATAAGAGCCAGAAGATGAATGTCAAAACAATTGCCATCATAGCACTTTCAGCATTTGTTGTGTTACTAGTGTTCATTGGAGCTCTTTCCATCTTTTTTAAATGGAGAAAAGTTGGCAGACCGTCTAGTGCTGTTGGCCCTGTTTTCACATCATCAATTAACAAAAGATCTGGTCTAGGATCAGCCTTATCAAGTAGCATTGCAAGCTCCACCTCTGTTTCCCTAATTTCCACAATGCCAACCAGTCTTCAATCTGTTAAAACATTTGCACTCTCTGAACTTGAGAAAGCAACAGACAAGTTTAGCTCAAAAAGGATTTTAGGTGAAGGGGGATTTGGCCGAGTTTACTGTGGTATTTTGGAAGATGGAAATGAAGTTGCAGTTAAGTTGCTTACTCGGGACAATCAGAATAGGGACCGTGAATTTATTGCAGAAGTTGAGATGTTGAGTAGACTGCATCATCGGAATCTTGTGAAACTGATTGGGATATGCATTGAAGGGCGAACTCGCTGCTTAGTTTATGAGCTTGTCCATAATGGCAGTGTTGAGTCTCACTTGCATGGCATTGACAAGAGAAAAGGACCTCTTGACTGGGACGCACGATTAAAGATTGCTCTTGGAGCAGCAAGAGGTTTGGCATATCTTCATGAAGATTCTAATCCCCGTGTAATTCACCGTGATTTCAAGGCAAGTAATGTTCTGTTGGAAGTTGACTGCACCCCGAAGGTTTCAGATTTTGGATTGGCTAGGGAAGCAACTGAAGGAAGTGAACATATCTCAACACGGGTGATGGGAACTTTCGGGTACGTAGCCCCTGAATATGCAATGACTGGGCACCTGCTCGTCAAAAGCGATGTTTACAGTTATGGAGTCGTGCTACTTGAGCTTCTTTCGGGAAGAAAACCGGTAGACATGTCCCAACCACATGGTGAGGAGAACCTCGTAACGTGGGCGCGGCCTCTATTGACCAGTAGAGAAGGTTTGGAGCAACTAGTAGATCCTTCTCTAGCTGGTACTTACGACTTTGATGACATGGCCAAGGTGGCTGCCATAGCTTCAATGTGCGTTCATCCAGAGGTGACCCAGAGGCCATTTATGGGAGAAGTTGTGCAGGCTCTAAAACTGATATACAACGACACAGACGAGACATGCGCAGACTACTGCAGTCAAAAGGAGTCCTCTGCTCGGGACTCGGATTTCAAAGGCGACCTTGTCCCATCCGACAGCAGTTGGTGGAATGCTGGTGGCCTTACACCTCGACTGACATATGGTCAGGCCTCTTCCTTCATCACCATGGAATACAGCTCTGGCCCTCTTGAAGAGATGGAAAACCGTCCGTTTTCAACTTCAAGTTTGGTAGGCGACGAGATATCTTTGCCTATTCGGCATGGAAACAGGTCAGGTCCGTTACGAACTGCTCGAAGCAAGCCTGCATTCTATAGATTTTCAGGAAGTAGGAGCGAGCACGGAGGATTTCTTTCAAGGCCTTCTTGGAACAACAGCGGATTTTGGGTTTGA 2328 45.19 MPFSTLHLLLVLHAFDLLFSCSGQSSVSPHIYLSPSLQPNLQTTTTEMSTEHARLESISFSFVPSKLRGNWIFKSSLGPSTSPAPSPGPRSAPLPIRHHRRRRVRPHVVAPTPSKDQGCDQICMEPLTAAPFGSPCGCVFPMKVRLLLDIAPYAVFPVMNELESEIAVGTYLEQSQVKIMGASADSQNQGRTMVDINLVPLGEKFDNTTAVLTYRRFWDKKVHLNMTLFGDYEVVYISYPGIPSSPPYGGYMGSAPSGSAGDLPITANFVNKSQKMNVKTIAIIALSAFVVLLVFIGALSIFFKWRKVGRPSSAVGPVFTSSINKRSGLGSALSSSIASSTSVSLISTMPTSLQSVKTFALSELEKATDKFSSKRILGEGGFGRVYCGILEDGNEVAVKLLTRDNQNRDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVHNGSVESHLHGIDKRKGPLDWDARLKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEVDCTPKVSDFGLAREATEGSEHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPHGEENLVTWARPLLTSREGLEQLVDPSLAGTYDFDDMAKVAAIASMCVHPEVTQRPFMGEVVQALKLIYNDTDETCADYCSQKESSARDSDFKGDLVPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMENRPFSTSSLVGDEISLPIRHGNRSGPLRTARSKPAFYRFSGSRSEHGGFLSRPSWNNSGFWV 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18173193 18181116 + Lsi05G010670.1 Lsi05g01067 663559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01067 775 CDD STKc_IRAK 377 646 - -
Lsi05g01067 775 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 46 771 - -
Lsi05g01067 775 Gene3D Transferase(Phosphotransferase) domain 1 447 670 - -
Lsi05g01067 775 ProSiteProfiles Protein kinase domain profile. 371 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01067 775 Pfam Protein tyrosine and serine/threonine kinase 374 642 IPR001245 GO:0004672|GO:0006468
Lsi05g01067 775 ProSitePatterns Protein kinases ATP-binding region signature. 377 399 IPR017441 GO:0005524
Lsi05g01067 775 MobiDBLite consensus disorder prediction 94 108 - -
Lsi05g01067 775 SUPERFAMILY Protein kinase-like (PK-like) 355 650 IPR011009 -
Lsi05g01067 775 MobiDBLite consensus disorder prediction 78 115 - -
Lsi05g01067 775 PANTHER OS01G0750732 PROTEIN 46 771 - -
Lsi05g01067 775 Gene3D Phosphorylase Kinase; domain 1 343 446 - -
Lsi05g01067 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 493 505 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02938 Lsi-Chr2:35531292 Lsi05g01067 Lsi-Chr5:18173193 0 dispersed
Lsi03g01118 Lsi-Chr3:21364216 Lsi05g01067 Lsi-Chr5:18173193 7.06E-129 dispersed
Lsi05g01067 Lsi-Chr5:18173193 Lsi09g01752 Lsi-Chr9:26197883 7.11E-104 dispersed
Lsi05g01067 Lsi-Chr5:18173193 Lsi06g00279 Lsi-Chr6:3176091 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83650 PF07714 PK_Tyr_Ser-Thr 2.10E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01067 - - csv:101203278 1397.1