Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi05g01067 | ATGCCTTTCTCGACTTTGCACCTTCTTTTGGTTCTTCATGCGTTCGATTTGCTTTTCTCTTGCTCAGGACAATCTTCAGTTTCACCACACATATACTTATCTCCTTCCTTACAGCCAAACCTGCAAACAACGACTACAGAAATGTCAACAGAGCATGCAAGGTTGGAGTCGATAAGTTTTTCATTTGTGCCTTCAAAGTTACGTGGTAACTGGATATTTAAGTCTTCTTTGGGACCATCTACTTCTCCTGCACCCTCTCCAGGTCCTAGGAGTGCACCCTTGCCTATCCGACATCATCGACGGCGTCGTGTACGACCTCATGTGGTTGCCCCTACCCCATCAAAAGACCAAGGTTGTGATCAAATATGCATGGAGCCCCTTACTGCAGCTCCCTTTGGTTCACCTTGTGGCTGTGTGTTTCCCATGAAAGTCAGACTTCTTCTGGATATAGCTCCATATGCTGTTTTTCCTGTGATGAACGAGCTTGAAAGTGAGATTGCAGTGGGAACGTACTTGGAGCAGAGTCAAGTGAAAATCATGGGTGCAAGTGCAGACAGTCAAAATCAAGGAAGAACTATGGTGGACATAAATTTAGTACCTCTAGGAGAGAAGTTTGATAATACAACTGCAGTACTGACTTACAGAAGGTTTTGGGATAAAAAAGTGCATTTAAATATGACGCTTTTTGGTGATTATGAAGTTGTCTACATCAGCTACCCAGGGATTCCTTCTTCACCGCCATATGGAGGGTACATGGGAAGTGCTCCTAGTGGAAGTGCGGGTGATCTTCCCATTACTGCAAATTTTGTTAATAAGAGCCAGAAGATGAATGTCAAAACAATTGCCATCATAGCACTTTCAGCATTTGTTGTGTTACTAGTGTTCATTGGAGCTCTTTCCATCTTTTTTAAATGGAGAAAAGTTGGCAGACCGTCTAGTGCTGTTGGCCCTGTTTTCACATCATCAATTAACAAAAGATCTGGTCTAGGATCAGCCTTATCAAGTAGCATTGCAAGCTCCACCTCTGTTTCCCTAATTTCCACAATGCCAACCAGTCTTCAATCTGTTAAAACATTTGCACTCTCTGAACTTGAGAAAGCAACAGACAAGTTTAGCTCAAAAAGGATTTTAGGTGAAGGGGGATTTGGCCGAGTTTACTGTGGTATTTTGGAAGATGGAAATGAAGTTGCAGTTAAGTTGCTTACTCGGGACAATCAGAATAGGGACCGTGAATTTATTGCAGAAGTTGAGATGTTGAGTAGACTGCATCATCGGAATCTTGTGAAACTGATTGGGATATGCATTGAAGGGCGAACTCGCTGCTTAGTTTATGAGCTTGTCCATAATGGCAGTGTTGAGTCTCACTTGCATGGCATTGACAAGAGAAAAGGACCTCTTGACTGGGACGCACGATTAAAGATTGCTCTTGGAGCAGCAAGAGGTTTGGCATATCTTCATGAAGATTCTAATCCCCGTGTAATTCACCGTGATTTCAAGGCAAGTAATGTTCTGTTGGAAGTTGACTGCACCCCGAAGGTTTCAGATTTTGGATTGGCTAGGGAAGCAACTGAAGGAAGTGAACATATCTCAACACGGGTGATGGGAACTTTCGGGTACGTAGCCCCTGAATATGCAATGACTGGGCACCTGCTCGTCAAAAGCGATGTTTACAGTTATGGAGTCGTGCTACTTGAGCTTCTTTCGGGAAGAAAACCGGTAGACATGTCCCAACCACATGGTGAGGAGAACCTCGTAACGTGGGCGCGGCCTCTATTGACCAGTAGAGAAGGTTTGGAGCAACTAGTAGATCCTTCTCTAGCTGGTACTTACGACTTTGATGACATGGCCAAGGTGGCTGCCATAGCTTCAATGTGCGTTCATCCAGAGGTGACCCAGAGGCCATTTATGGGAGAAGTTGTGCAGGCTCTAAAACTGATATACAACGACACAGACGAGACATGCGCAGACTACTGCAGTCAAAAGGAGTCCTCTGCTCGGGACTCGGATTTCAAAGGCGACCTTGTCCCATCCGACAGCAGTTGGTGGAATGCTGGTGGCCTTACACCTCGACTGACATATGGTCAGGCCTCTTCCTTCATCACCATGGAATACAGCTCTGGCCCTCTTGAAGAGATGGAAAACCGTCCGTTTTCAACTTCAAGTTTGGTAGGCGACGAGATATCTTTGCCTATTCGGCATGGAAACAGGTCAGGTCCGTTACGAACTGCTCGAAGCAAGCCTGCATTCTATAGATTTTCAGGAAGTAGGAGCGAGCACGGAGGATTTCTTTCAAGGCCTTCTTGGAACAACAGCGGATTTTGGGTTTGA | 2328 | 45.19 | MPFSTLHLLLVLHAFDLLFSCSGQSSVSPHIYLSPSLQPNLQTTTTEMSTEHARLESISFSFVPSKLRGNWIFKSSLGPSTSPAPSPGPRSAPLPIRHHRRRRVRPHVVAPTPSKDQGCDQICMEPLTAAPFGSPCGCVFPMKVRLLLDIAPYAVFPVMNELESEIAVGTYLEQSQVKIMGASADSQNQGRTMVDINLVPLGEKFDNTTAVLTYRRFWDKKVHLNMTLFGDYEVVYISYPGIPSSPPYGGYMGSAPSGSAGDLPITANFVNKSQKMNVKTIAIIALSAFVVLLVFIGALSIFFKWRKVGRPSSAVGPVFTSSINKRSGLGSALSSSIASSTSVSLISTMPTSLQSVKTFALSELEKATDKFSSKRILGEGGFGRVYCGILEDGNEVAVKLLTRDNQNRDREFIAEVEMLSRLHHRNLVKLIGICIEGRTRCLVYELVHNGSVESHLHGIDKRKGPLDWDARLKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEVDCTPKVSDFGLAREATEGSEHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPHGEENLVTWARPLLTSREGLEQLVDPSLAGTYDFDDMAKVAAIASMCVHPEVTQRPFMGEVVQALKLIYNDTDETCADYCSQKESSARDSDFKGDLVPSDSSWWNAGGLTPRLTYGQASSFITMEYSSGPLEEMENRPFSTSSLVGDEISLPIRHGNRSGPLRTARSKPAFYRFSGSRSEHGGFLSRPSWNNSGFWV | 775 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 18173193 | 18181116 | + | Lsi05G010670.1 | Lsi05g01067 | 663559 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi05g01067 | 775 | CDD | STKc_IRAK | 377 | 646 | - | - | |
Lsi05g01067 | 775 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 | 46 | 771 | - | - | |
Lsi05g01067 | 775 | Gene3D | Transferase(Phosphotransferase) domain 1 | 447 | 670 | - | - | |
Lsi05g01067 | 775 | ProSiteProfiles | Protein kinase domain profile. | 371 | 646 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi05g01067 | 775 | Pfam | Protein tyrosine and serine/threonine kinase | 374 | 642 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi05g01067 | 775 | ProSitePatterns | Protein kinases ATP-binding region signature. | 377 | 399 | IPR017441 | GO:0005524 | |
Lsi05g01067 | 775 | MobiDBLite | consensus disorder prediction | 94 | 108 | - | - | |
Lsi05g01067 | 775 | SUPERFAMILY | Protein kinase-like (PK-like) | 355 | 650 | IPR011009 | - | |
Lsi05g01067 | 775 | MobiDBLite | consensus disorder prediction | 78 | 115 | - | - | |
Lsi05g01067 | 775 | PANTHER | OS01G0750732 PROTEIN | 46 | 771 | - | - | |
Lsi05g01067 | 775 | Gene3D | Phosphorylase Kinase; domain 1 | 343 | 446 | - | - | |
Lsi05g01067 | 775 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 493 | 505 | IPR008271 | GO:0004672|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g02938 | Lsi-Chr2:35531292 | Lsi05g01067 | Lsi-Chr5:18173193 | 0 | dispersed | |
Lsi03g01118 | Lsi-Chr3:21364216 | Lsi05g01067 | Lsi-Chr5:18173193 | 7.06E-129 | dispersed | |
Lsi05g01067 | Lsi-Chr5:18173193 | Lsi09g01752 | Lsi-Chr9:26197883 | 7.11E-104 | dispersed | |
Lsi05g01067 | Lsi-Chr5:18173193 | Lsi06g00279 | Lsi-Chr6:3176091 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83650 | PF07714 | PK_Tyr_Ser-Thr | 2.10E-46 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi05g01067 | - | - | csv:101203278 | 1397.1 |