Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01082 ATGAAAGGAGTGGAAAATTCAGAGGAATTTAAGTTGTTTTATTACTTTATCAAATCCGATGGAAATCCCAAAACCGATCCTCTCATCCTTTGGCTCACGGGAGGACCTGGTTGCTCTGCTTTCTCTGCACTTGCCGTTGAAGCTGGTCCTATAAGTTTTAAAGGACAAGTGTATAATGGAAGCCTACCTCAACCAAAGTTCAACCCTTACTCATGGACAAAGAAATCTAGTATAATATTTCTAGATTTGCCTGTGGGTACTGGATTTTCATATACTACAACAACTTCAGAAATTCCTAAATCAGGAGATTTTACTCAAGTTCATCATGCTACTCAATTCTTAAGAAAGTGGTTGGCTGATCATCCAGAATTTATATCAAATTCGTTCTATATTTCTAGAAATTCGGATACATATTGGGAAATCCTATCACCAGTACTCCTTATGCAAATAAAAATTTTCAAATTCCTTTTGCTCATAACATGGCTCTCATCTCTAATGAATTGTTTGAGGAAACGTGAATGTACTTCAAAAGTTCAACCTGAATTTATTTTAGAGCCCCAATGTTCGTCTTCAATACAACGAGATATACTTGGTCATATATATCGTTACGGCAAACGTCTTGATCCTAGTTGCCACGATTATGAACACTTACTTGTTTACTATTGGATCAATGACGACCAAGTTCGAAAAGCACTTCATATACATGAGGAAAGCATTGGAGAATGGGTGAGATGTAAGAACACTAGATATTACAATTATGAGCTTAATGACGTTTTTTCTTATCACGTAAACCTTAGTTCTAAAGGTTATCGGTCGTTAATCTACAGTTGCAAGAATTTCTATCTCTTGATTACTTTTTGTGATTCGAATAATAGTGGGGATCATGATATGGAGGTGTCACATATGCAAACTCAAGCATGGATCAAATCTTTAAATTATTCCATTATCGAAGATTGGAGACCATGGCTCATTGAGGATGAAGTAGCTGGATTCACGAGAAGCTATGCAAATAAGATGACATTTGCAACTATAAAAGGTGGTGGACATACACCACAATATAGAAGAAAAGAATGTAGCATACTATTTAACAGATGGATAGAAGAGAATCCTTATAAA 1116 35.66 MKGVENSEEFKLFYYFIKSDGNPKTDPLILWLTGGPGCSAFSALAVEAGPISFKGQVYNGSLPQPKFNPYSWTKKSSIIFLDLPVGTGFSYTTTTSEIPKSGDFTQVHHATQFLRKWLADHPEFISNSFYISRNSDTYWEILSPVLLMQIKIFKFLLLITWLSSLMNCLRKRECTSKVQPEFILEPQCSSSIQRDILGHIYRYGKRLDPSCHDYEHLLVYYWINDDQVRKALHIHEESIGEWVRCKNTRYYNYELNDVFSYHVNLSSKGYRSLIYSCKNFYLLITFCDSNNSGDHDMEVSHMQTQAWIKSLNYSIIEDWRPWLIEDEVAGFTRSYANKMTFATIKGGGHTPQYRRKECSILFNRWIEENPYK 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18438376 18444182 - Lsi05G010820.1 Lsi05g01082 663574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01082 372 Pfam Serine carboxypeptidase 167 367 IPR001563 GO:0004185|GO:0006508
Lsi05g01082 372 Pfam Serine carboxypeptidase 4 135 IPR001563 GO:0004185|GO:0006508
Lsi05g01082 372 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 1-RELATED 172 369 - -
Lsi05g01082 372 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 1-RELATED 3 155 - -
Lsi05g01082 372 Gene3D alpha/beta hydrolase 2 136 IPR029058 -
Lsi05g01082 372 Gene3D alpha/beta hydrolase 164 371 IPR029058 -
Lsi05g01082 372 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 172 369 IPR001563 GO:0004185|GO:0006508
Lsi05g01082 372 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 3 155 IPR001563 GO:0004185|GO:0006508
Lsi05g01082 372 SUPERFAMILY alpha/beta-Hydrolases 6 368 IPR029058 -
Lsi05g01082 372 PRINTS Carboxypeptidase C serine protease (S10) family signature 68 80 IPR001563 GO:0004185|GO:0006508
Lsi05g01082 372 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 142 IPR001563 GO:0004185|GO:0006508
Lsi05g01082 372 PRINTS Carboxypeptidase C serine protease (S10) family signature 339 352 IPR001563 GO:0004185|GO:0006508
Lsi05g01082 372 PRINTS Carboxypeptidase C serine protease (S10) family signature 81 91 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01469 Lsi-Chr4:22424934 Lsi05g01082 Lsi-Chr5:18438376 1.57E-18 dispersed
Lsi05g01082 Lsi-Chr5:18438376 Lsi11g00697 Lsi-Chr11:7367195 6.81E-31 dispersed
Lsi05g01082 Lsi-Chr5:18438376 Lsi05g01083 Lsi-Chr5:18451627 6.58E-140 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01082 K16296 - csv:101207623 397.897