Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi05g01093 | ATGGCGGTTTCTCTTACATTACAGTCTTCAATCCTTTTCCTTCTTCTTTTCATCATCTTCTTCTTCGTTCAATCCAGTTTTGCTGGAGATGAGAGATTGCAGAGCTTCAATTCTTCGTCATTGGCGGACCGGTATATTAAGAATGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTTGAGCATTCGCAATAGCACAGAGAGAAGGAATTTGGGGTTCTTCTCTTGTGGAACAGGAAATCCAATCGATGATTGTTGGCGTTGTGACCCACGTTGGCAACTACGGCGAAAGCACTTGGCTGACTGCGGCATTGGGTTCGGTCGTAATGCAGTTGGTGGCCGTGATGGGCGATACTACGTCGTCTCTGATCCTGGTGACGACGATCCTGTTAATCCCAGACCGGGGACTCTTCGTCATGCTGTGATTCAAGACAGGCCATTGTGGATTGTGTTCAAACGAGATATGGTTATCACTCTAAAGCAAGAACTCATCATGAACAGCTTCAAGACAATTGATGGCCGTGGTGCTAATGTCCACATTGCTTATGGAGCTTGTATTACAATCCAATTCATAACCAATGTCATTATTCATGGTTTGCATATTCACGACTGCAAACAGACGGGGAACGCCATGGTTCGAAGCTCACCGAGTCATTATGGATGGAGGACAATGGCTGATGGTGATGGCATTTCCATTTTTGGGTCAAGTCATATTTGGATCGACCATAATTCTCTTTCTACCTGTGCTGATGGGCTCATTGATGCTGTCATGGGATCAACTGCCATCACAATTTCTAACAACTACTTCACCCACCACAATGAGGTGATGCTCTTGGGTCATAGTGACTCTTATGTAAGAGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGTGAAGTAAACAATGACTATACTCACTGGGTAATGTATGCCATCGGTGGAAGTGCTGATCCCACCATTAATAGCCAGGGCAACAGATATCTTGCTCCTGCCAACCCTTTTGCCAAAGAGAGAGTTGAGACAAATAACGGTGTATGGAGGCACTGGAATTGGAGATCAGAGGGAGATCTGATGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGTGCAGCAGCTAGTTATGCAAGAGCCTCAAGCTTAGGAGCTAAATCCTCTTCCTTGGTGGGATCCATTACTTCAAATGCAGGTGCCCTTTCTTGTCGTAGGGGATTCCGTTGTTAA | 1242 | 45.01 | MAVSLTLQSSILFLLLFIIFFFVQSSFAGDERLQSFNSSSLADRYIKNEHAVDNPEEIASMVDLSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLADCGIGFGRNAVGGRDGRYYVVSDPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFITNVIIHGLHIHDCKQTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSTCADGLIDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEVNNDYTHWVMYAIGGSADPTINSQGNRYLAPANPFAKERVETNNGVWRHWNWRSEGDLMLNGAYFTPSGAGAAASYARASSLGAKSSSLVGSITSNAGALSCRRGFRC | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 18683540 | 18689549 | - | Lsi05G010930.1 | Lsi05g01093 | 663585 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi05g01093 | 413 | PRINTS | Pollen allergen Amb family signature | 166 | 182 | IPR018082 | - | |
Lsi05g01093 | 413 | PRINTS | Pollen allergen Amb family signature | 294 | 313 | IPR018082 | - | |
Lsi05g01093 | 413 | PRINTS | Pollen allergen Amb family signature | 130 | 155 | IPR018082 | - | |
Lsi05g01093 | 413 | PRINTS | Pollen allergen Amb family signature | 316 | 335 | IPR018082 | - | |
Lsi05g01093 | 413 | PRINTS | Pollen allergen Amb family signature | 106 | 123 | IPR018082 | - | |
Lsi05g01093 | 413 | PRINTS | Pollen allergen Amb family signature | 355 | 379 | IPR018082 | - | |
Lsi05g01093 | 413 | PRINTS | Pollen allergen Amb family signature | 384 | 407 | IPR018082 | - | |
Lsi05g01093 | 413 | SMART | amb_all | 158 | 339 | IPR002022 | - | |
Lsi05g01093 | 413 | PANTHER | PECTATE LYASE | 41 | 410 | - | - | |
Lsi05g01093 | 413 | PANTHER | PECTATE LYASE 18-RELATED | 41 | 410 | IPR045032 | GO:0030570 | |
Lsi05g01093 | 413 | Gene3D | - | 83 | 406 | IPR012334 | - | |
Lsi05g01093 | 413 | Pfam | Pectate lyase | 166 | 308 | IPR002022 | - | |
Lsi05g01093 | 413 | SUPERFAMILY | Pectin lyase-like | 61 | 408 | IPR011050 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi05g01093 | Lsi-Chr5:18683540 | Lsi08g01628 | Lsi-Chr8:24200656 | 2.55E-178 | dispersed | |
Lsi05g01093 | Lsi-Chr5:18683540 | Lsi05g01813 | Lsi-Chr5:25363141 | 0 | wgd | |
Lsi05g01093 | Lsi-Chr5:18683540 | Lsi09g01161 | Lsi-Chr9:18677108 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi05g01093 | K01728 | - | csv:101207204 | 771.926 |