Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01093 ATGGCGGTTTCTCTTACATTACAGTCTTCAATCCTTTTCCTTCTTCTTTTCATCATCTTCTTCTTCGTTCAATCCAGTTTTGCTGGAGATGAGAGATTGCAGAGCTTCAATTCTTCGTCATTGGCGGACCGGTATATTAAGAATGAGCATGCTGTTGATAATCCAGAGGAAATTGCATCAATGGTTGATTTGAGCATTCGCAATAGCACAGAGAGAAGGAATTTGGGGTTCTTCTCTTGTGGAACAGGAAATCCAATCGATGATTGTTGGCGTTGTGACCCACGTTGGCAACTACGGCGAAAGCACTTGGCTGACTGCGGCATTGGGTTCGGTCGTAATGCAGTTGGTGGCCGTGATGGGCGATACTACGTCGTCTCTGATCCTGGTGACGACGATCCTGTTAATCCCAGACCGGGGACTCTTCGTCATGCTGTGATTCAAGACAGGCCATTGTGGATTGTGTTCAAACGAGATATGGTTATCACTCTAAAGCAAGAACTCATCATGAACAGCTTCAAGACAATTGATGGCCGTGGTGCTAATGTCCACATTGCTTATGGAGCTTGTATTACAATCCAATTCATAACCAATGTCATTATTCATGGTTTGCATATTCACGACTGCAAACAGACGGGGAACGCCATGGTTCGAAGCTCACCGAGTCATTATGGATGGAGGACAATGGCTGATGGTGATGGCATTTCCATTTTTGGGTCAAGTCATATTTGGATCGACCATAATTCTCTTTCTACCTGTGCTGATGGGCTCATTGATGCTGTCATGGGATCAACTGCCATCACAATTTCTAACAACTACTTCACCCACCACAATGAGGTGATGCTCTTGGGTCATAGTGACTCTTATGTAAGAGACAAGCAAATGCAAGTCACCATTGCTTATAACCATTTTGGTGAAGTAAACAATGACTATACTCACTGGGTAATGTATGCCATCGGTGGAAGTGCTGATCCCACCATTAATAGCCAGGGCAACAGATATCTTGCTCCTGCCAACCCTTTTGCCAAAGAGAGAGTTGAGACAAATAACGGTGTATGGAGGCACTGGAATTGGAGATCAGAGGGAGATCTGATGCTAAATGGAGCCTATTTCACTCCATCAGGAGCTGGTGCAGCAGCTAGTTATGCAAGAGCCTCAAGCTTAGGAGCTAAATCCTCTTCCTTGGTGGGATCCATTACTTCAAATGCAGGTGCCCTTTCTTGTCGTAGGGGATTCCGTTGTTAA 1242 45.01 MAVSLTLQSSILFLLLFIIFFFVQSSFAGDERLQSFNSSSLADRYIKNEHAVDNPEEIASMVDLSIRNSTERRNLGFFSCGTGNPIDDCWRCDPRWQLRRKHLADCGIGFGRNAVGGRDGRYYVVSDPGDDDPVNPRPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITIQFITNVIIHGLHIHDCKQTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSTCADGLIDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEVNNDYTHWVMYAIGGSADPTINSQGNRYLAPANPFAKERVETNNGVWRHWNWRSEGDLMLNGAYFTPSGAGAAASYARASSLGAKSSSLVGSITSNAGALSCRRGFRC 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18683540 18689549 - Lsi05G010930.1 Lsi05g01093 663585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01093 413 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Lsi05g01093 413 PRINTS Pollen allergen Amb family signature 294 313 IPR018082 -
Lsi05g01093 413 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Lsi05g01093 413 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Lsi05g01093 413 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Lsi05g01093 413 PRINTS Pollen allergen Amb family signature 355 379 IPR018082 -
Lsi05g01093 413 PRINTS Pollen allergen Amb family signature 384 407 IPR018082 -
Lsi05g01093 413 SMART amb_all 158 339 IPR002022 -
Lsi05g01093 413 PANTHER PECTATE LYASE 41 410 - -
Lsi05g01093 413 PANTHER PECTATE LYASE 18-RELATED 41 410 IPR045032 GO:0030570
Lsi05g01093 413 Gene3D - 83 406 IPR012334 -
Lsi05g01093 413 Pfam Pectate lyase 166 308 IPR002022 -
Lsi05g01093 413 SUPERFAMILY Pectin lyase-like 61 408 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01093 Lsi-Chr5:18683540 Lsi08g01628 Lsi-Chr8:24200656 2.55E-178 dispersed
Lsi05g01093 Lsi-Chr5:18683540 Lsi05g01813 Lsi-Chr5:25363141 0 wgd
Lsi05g01093 Lsi-Chr5:18683540 Lsi09g01161 Lsi-Chr9:18677108 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01093 K01728 - csv:101207204 771.926