Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi05g01118 | ATGGGCGGCCGCACGTTGTTCACTCTGGCTGAGGTTGCCTCCCATGACAATCGCAACGACTGCTGGTTGATCATTGAGGACAAGGTGTATGATGTAACAAAATTCCTTGAAGACCATCCTGGTGGTGATGAAGTCTTGTTGTCAGGCGTTGGTAAGGATGCAACCAATGATTTTTTCGATGTCGGGCACAGTAGCGCTGCTAGAGCAATGATGGAAGAATTTTACGTAGGCGATATCGATAGCTCGACTATTCCTACAAAAAGAAAGTACACTCCTCCAAAGCAGCCCCTATACAACCAAGACAAGACACCAGAATTCATTATCAAGGTCCTCCAGTTTCTAGCACCCCTTGTGATTTTGGGATTGGCTTTTGGCATCCACCTCTATACCAAAACAACTTAA | 402 | 45.77 | MGGRTLFTLAEVASHDNRNDCWLIIEDKVYDVTKFLEDHPGGDEVLLSGVGKDATNDFFDVGHSSAARAMMEEFYVGDIDSSTIPTKRKYTPPKQPLYNQDKTPEFIIKVLQFLAPLVILGLAFGIHLYTKTT | 133 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 18960560 | 18962623 | - | Lsi05G011180.1 | Lsi05g01118 | 663610 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi05g01118 | 133 | PRINTS | Cytochrome B5 signature | 39 | 53 | IPR001199 | - | |
Lsi05g01118 | 133 | PRINTS | Cytochrome B5 signature | 54 | 61 | IPR001199 | - | |
Lsi05g01118 | 133 | PRINTS | Cytochrome B5 signature | 67 | 79 | IPR001199 | - | |
Lsi05g01118 | 133 | PRINTS | Cytochrome B5 signature | 29 | 39 | IPR001199 | - | |
Lsi05g01118 | 133 | PANTHER | - | 2 | 131 | - | - | |
Lsi05g01118 | 133 | SUPERFAMILY | Cytochrome b5-like heme/steroid binding domain | 5 | 90 | IPR036400 | - | |
Lsi05g01118 | 133 | Pfam | Cytochrome b5-like Heme/Steroid binding domain | 8 | 79 | IPR001199 | - | |
Lsi05g01118 | 133 | PANTHER | CYTOCHROME B5 | 2 | 131 | - | - | |
Lsi05g01118 | 133 | ProSitePatterns | Cytochrome b5 family, heme-binding domain signature. | 35 | 42 | IPR018506 | GO:0020037 | |
Lsi05g01118 | 133 | Gene3D | - | 3 | 85 | IPR036400 | - | |
Lsi05g01118 | 133 | ProSiteProfiles | Cytochrome b5 family, heme-binding domain profile. | 4 | 80 | IPR001199 | - | |
Lsi05g01118 | 133 | SMART | Cyt_b5_2 | 7 | 80 | IPR001199 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi05g01118 | Lsi-Chr5:18960560 | Lsi09g00003 | Lsi-Chr9:27466 | 7.92E-59 | dispersed | |
Lsi11g00227 | Lsi-Chr11:2286347 | Lsi05g01118 | Lsi-Chr5:18960560 | 2.52E-20 | transposed | |
Lsi05g01118 | Lsi-Chr5:18960560 | Lsi05g01833 | Lsi-Chr5:25617233 | 8.92E-68 | wgd | |
Lsi05g01118 | Lsi-Chr5:18960560 | Lsi09g01152 | Lsi-Chr9:18461940 | 1.04E-53 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi05g01118 | K23490 | - | csv:101212882 | 261.922 |