Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01118 ATGGGCGGCCGCACGTTGTTCACTCTGGCTGAGGTTGCCTCCCATGACAATCGCAACGACTGCTGGTTGATCATTGAGGACAAGGTGTATGATGTAACAAAATTCCTTGAAGACCATCCTGGTGGTGATGAAGTCTTGTTGTCAGGCGTTGGTAAGGATGCAACCAATGATTTTTTCGATGTCGGGCACAGTAGCGCTGCTAGAGCAATGATGGAAGAATTTTACGTAGGCGATATCGATAGCTCGACTATTCCTACAAAAAGAAAGTACACTCCTCCAAAGCAGCCCCTATACAACCAAGACAAGACACCAGAATTCATTATCAAGGTCCTCCAGTTTCTAGCACCCCTTGTGATTTTGGGATTGGCTTTTGGCATCCACCTCTATACCAAAACAACTTAA 402 45.77 MGGRTLFTLAEVASHDNRNDCWLIIEDKVYDVTKFLEDHPGGDEVLLSGVGKDATNDFFDVGHSSAARAMMEEFYVGDIDSSTIPTKRKYTPPKQPLYNQDKTPEFIIKVLQFLAPLVILGLAFGIHLYTKTT 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18960560 18962623 - Lsi05G011180.1 Lsi05g01118 663610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01118 133 PRINTS Cytochrome B5 signature 39 53 IPR001199 -
Lsi05g01118 133 PRINTS Cytochrome B5 signature 54 61 IPR001199 -
Lsi05g01118 133 PRINTS Cytochrome B5 signature 67 79 IPR001199 -
Lsi05g01118 133 PRINTS Cytochrome B5 signature 29 39 IPR001199 -
Lsi05g01118 133 PANTHER - 2 131 - -
Lsi05g01118 133 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 90 IPR036400 -
Lsi05g01118 133 Pfam Cytochrome b5-like Heme/Steroid binding domain 8 79 IPR001199 -
Lsi05g01118 133 PANTHER CYTOCHROME B5 2 131 - -
Lsi05g01118 133 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 35 42 IPR018506 GO:0020037
Lsi05g01118 133 Gene3D - 3 85 IPR036400 -
Lsi05g01118 133 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 4 80 IPR001199 -
Lsi05g01118 133 SMART Cyt_b5_2 7 80 IPR001199 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01118 Lsi-Chr5:18960560 Lsi09g00003 Lsi-Chr9:27466 7.92E-59 dispersed
Lsi11g00227 Lsi-Chr11:2286347 Lsi05g01118 Lsi-Chr5:18960560 2.52E-20 transposed
Lsi05g01118 Lsi-Chr5:18960560 Lsi05g01833 Lsi-Chr5:25617233 8.92E-68 wgd
Lsi05g01118 Lsi-Chr5:18960560 Lsi09g01152 Lsi-Chr9:18461940 1.04E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01118 K23490 - csv:101212882 261.922