Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01118 ATGGGCGGCCGCACGTTGTTCACTCTGGCTGAGGTTGCCTCCCATGACAATCGCAACGACTGCTGGTTGATCATTGAGGACAAGGTGTATGATGTAACAAAATTCCTTGAAGACCATCCTGGTGGTGATGAAGTCTTGTTGTCAGGCGTTGGTAAGGATGCAACCAATGATTTTTTCGATGTCGGGCACAGTAGCGCTGCTAGAGCAATGATGGAAGAATTTTACGTAGGCGATATCGATAGCTCGACTATTCCTACAAAAAGAAAGTACACTCCTCCAAAGCAGCCCCTATACAACCAAGACAAGACACCAGAATTCATTATCAAGGTCCTCCAGTTTCTAGCACCCCTTGTGATTTTGGGATTGGCTTTTGGCATCCACCTCTATACCAAAACAACTTAA 402 45.77 MGGRTLFTLAEVASHDNRNDCWLIIEDKVYDVTKFLEDHPGGDEVLLSGVGKDATNDFFDVGHSSAARAMMEEFYVGDIDSSTIPTKRKYTPPKQPLYNQDKTPEFIIKVLQFLAPLVILGLAFGIHLYTKTT 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18960560 18962623 - Lsi05G011180.1 Lsi05g01118 663610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01118 133 PRINTS Cytochrome B5 signature 39 53 IPR001199 -
Lsi05g01118 133 PRINTS Cytochrome B5 signature 54 61 IPR001199 -
Lsi05g01118 133 PRINTS Cytochrome B5 signature 67 79 IPR001199 -
Lsi05g01118 133 PRINTS Cytochrome B5 signature 29 39 IPR001199 -
Lsi05g01118 133 PANTHER - 2 131 - -
Lsi05g01118 133 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 90 IPR036400 -
Lsi05g01118 133 Pfam Cytochrome b5-like Heme/Steroid binding domain 8 79 IPR001199 -
Lsi05g01118 133 PANTHER CYTOCHROME B5 2 131 - -
Lsi05g01118 133 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 35 42 IPR018506 GO:0020037
Lsi05g01118 133 Gene3D - 3 85 IPR036400 -
Lsi05g01118 133 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 4 80 IPR001199 -
Lsi05g01118 133 SMART Cyt_b5_2 7 80 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01118 K23490 CYB5; cytochrome b5 - csv:101212882 261.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01118 Lsi-Chr5:18960560 Lsi09g00003 Lsi-Chr9:27466 7.92E-59 dispersed
Lsi11g00227 Lsi-Chr11:2286347 Lsi05g01118 Lsi-Chr5:18960560 2.52E-20 transposed
Lsi05g01118 Lsi-Chr5:18960560 Lsi05g01833 Lsi-Chr5:25617233 8.92E-68 wgd
Lsi05g01118 Lsi-Chr5:18960560 Lsi09g01152 Lsi-Chr9:18461940 1.04E-53 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G53560 78.4 7.0e-59 223.4
Lsi05g01833 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.1e-51 197.6
Lsi05g01118 . 4 131 NADPH P450 reductases AT5G53560 63.3 4.4e-45 177.6
Lsi09g01152 . 36 139 NADPH P450 reductases AT5G53560 70.2 4.7e-39 157.5
Lsi05g01833 . 1 132 NADPH P450 reductases AT5G48810 65.7 2.6e-48 188.3
Lsi05g01118 . 2 132 NADPH P450 reductases AT5G48810 61.7 4.6e-45 177.6
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G48810 59.6 7.9e-45 176.8
Lsi05g01833 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.0e-51 196.8
Lsi09g01152 . 31 139 NADPH P450 reductases AT2G32720 83.5 1.2e-47 186.0
Lsi05g01118 . 21 132 NADPH P450 reductases AT2G32720 72.3 2.7e-42 168.3
Lsi09g00003 . 22 133 NADPH P450 reductases AT2G32720 66.1 4.3e-40 161.0
Lsi01g01736 CCT 3 257 NADPH P450 reductases AT5G17770 79.6 1.2e-116 416.4
Lsi10g00932 . 10 282 NADPH P450 reductases AT5G17770 71.8 4.5e-116 414.5
Lsi03g01657 CCT 2 110 NADPH P450 reductases AT5G17770 81.7 1.8e-48 189.9
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G53560 78.4 7.0e-59 223.4
Lsi05g01833 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.1e-51 197.6
Lsi05g01118 . 4 131 NADPH P450 reductases AT5G53560 63.3 4.4e-45 177.6
Lsi09g01152 . 36 139 NADPH P450 reductases AT5G53560 70.2 4.7e-39 157.5
Lsi05g01833 . 1 132 NADPH P450 reductases AT5G48810 65.7 2.6e-48 188.3
Lsi05g01118 . 2 132 NADPH P450 reductases AT5G48810 61.7 4.6e-45 177.6
Lsi09g00003 . 1 134 NADPH P450 reductases AT5G48810 59.6 7.9e-45 176.8
Lsi05g01833 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.0e-51 196.8
Lsi09g01152 . 31 139 NADPH P450 reductases AT2G32720 83.5 1.2e-47 186.0
Lsi05g01118 . 21 132 NADPH P450 reductases AT2G32720 72.3 2.7e-42 168.3
Lsi09g00003 . 22 133 NADPH P450 reductases AT2G32720 66.1 4.3e-40 161.0
Lsi01g01736 CCT 3 257 NADPH P450 reductases AT5G17770 79.6 1.2e-116 416.4
Lsi10g00932 . 10 282 NADPH P450 reductases AT5G17770 71.8 4.5e-116 414.5
Lsi03g01657 CCT 2 110 NADPH P450 reductases AT5G17770 81.7 1.8e-48 189.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000252 4 9 3 5 3 5 9 4 4 3 4 4 8 5 5 9 5 6 9 4 5 4 5 5 4 4 4 10 5 2 156
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01118 Lsi_Chr05 FPKM 12.49789 14.158944 15.438583 20.583765 9.322341 12.332835 11.49481 15.86032 12.550448 15.468946