Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01139 ATGGTCAATTTACATGTATTGTTTCTCAGAGAAGCTTGTGAGGCTGCCCTTGAACAAAAATACTTTCTTGACCAATCTGAACTAGAAGGGTTTGTTGATGAAGCCAAAATTGCTCACCGGAAACAATTAAAATCGCTAAGAAGTGTGTTTGAAAAAGTTGCCGAGGCAGATGCGCCGTCCGAGGTGCCTGATTATCTTTGCTGTAAAATCACACTCGATATTCTACGTGATCCCGTTATTACTCCAAGCGGGGTTACATATGAGAGAGCAGTGATTCTCGACCATTTTCGAAAGGTCGACATTTTCTCGCATCGCGATCCTACTACTACATGTCATGTTGGTAACTTCGATCCCATAACACGTGAGCTGCTCGACGAGTCCCAGCTAGTACCAAACTTAGCCATCAAGGAAGCAGTGCAATCATTTCTAGATAAGCATGGATGGGCTTATAATACAGATTAA 462 42.64 MVNLHVLFLREACEAALEQKYFLDQSELEGFVDEAKIAHRKQLKSLRSVFEKVAEADAPSEVPDYLCCKITLDILRDPVITPSGVTYERAVILDHFRKVDIFSHRDPTTTCHVGNFDPITRELLDESQLVPNLAIKEAVQSFLDKHGWAYNTD 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19146629 19147729 + Lsi05G011390.1 Lsi05g01139 663631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01139 153 SMART Ubox_2 65 142 IPR003613 GO:0004842|GO:0016567
Lsi05g01139 153 ProSiteProfiles U-box domain profile. 61 149 IPR003613 GO:0004842|GO:0016567
Lsi05g01139 153 Pfam U-box domain 62 148 IPR003613 GO:0004842|GO:0016567
Lsi05g01139 153 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 152 IPR013083 -
Lsi05g01139 153 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 151 IPR045200 GO:0000209|GO:0061630
Lsi05g01139 153 SUPERFAMILY RING/U-box 57 150 - -
Lsi05g01139 153 CDD RING-Ubox_CHIP 62 142 IPR045202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01139 Lsi-Chr5:19146629 Lsi10g00540 Lsi-Chr10:7732852 3.13E-08 dispersed
Lsi05g01139 Lsi-Chr5:19146629 Lsi03g01816 Lsi-Chr3:29647859 1.77E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01139 K09561 - csv:101215457 242.276