Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01140 ATGGCGAAAACAGGCGTGTTTGATTCTGATCCTAAAGTTATGGGGAAAGCCACGGAGTTGAAGAGGGAGTTACAGAGACTTATCGTTGCTATAATTGATGACGATAATTATTCCACCGACACCATTGATAACGCTAAAGAGATTCTTTCTGCACTTAAGGAGTTGAAACTCAGGAAGAGATCGCGTTCTTCTTCTAATCTTTTTGAGAATCTCATTTGTCCTGAGGAATTTCGTTGTCCGCTTTCTAGAGAACTCATGAGAGATCCTGTCATTGTGTCTACTGGCGAGACATATGATAGACCTTTCATTCACAAATGGTTAAAATCAGGGAACAGGACTTGCCCCAGAACTCAGCAAGTTCTTTCACACACCAATCTCACTCCCAATCACTTGATTCGTGAAATGATATCTCAGTGGTGTACAAGTCGGGGAATTGAGTTGCAAGATCGTGTCCGTGTTCATTATCTTGACGATGATGTGATAACGGAGGCTGATCGAGACCGTTTTCTCACGTTAATAGAGAAAATGTCAATGACAATATCTGAACAGAAAGCAGCTGCTAAGGAGCTTCGAATGTTGACGAAGCGAATGCCCTCATTTCGAGCACTTTTTGGTGAGTCCCTTGATGCCATATCTTTGTTGCTTAGTCCACTTTGTGGAGATAAGTCACAAAGTATTAGTATTCACACGGATCTGCAAGAAGATGTGATCACAACCCTCTTGAATTTGTCGATCCATGACAACAACAAGAAGCTTGTTGCGGAAACACCCAAGGTAATACCTCTTCTAATGGAAGCGTTGAGATCAGGAACCATGGAAACAAGAAGCAATGCAGCTGCAGCCCTATTTACTCTGTCAGCTCTCGACTCAAACAAAGCGATCATCGGGAAAGCTGGTGCGTTGAAACCACTTATCGACCTTTTAGATGAGGGGCATCCTTTATCAATCAAAGATGCTGCTTCAGCAATTTTCAATCTTTGTATAATTCATGAAAACAAAGCAAGAGCTGTGCGAGATGGTGCAGTCCGAGTGCTTCTGAAAAAGATCATGAACCAGATGCATGTTGATGAGTTGTTGGCTATTCTTGCAATGTTATCAAGCCATCAAAAAGCTATCGAAGAAATTGGAGAACTTGGAGCTGTCCCTTTCTTACTCAGAATTATCAGGGAAAGTCCTTGTTCACGTAACAAGGAGAATTGCATTGTGATCATCCATGCTATCTGCTTATACGATCGAACCAAGTGGAAGGATATGAGGGAGGAAGAGAAATGTTATCGAACTATATCTGAACTTGCTCAGAATGGAACTTCAAGGGCCAAGAGAAAGGCCAGTGGCATACTTGAAAGACTAAACAGGGTAGTTAATATGACCCATACCGCCTAA 1383 42.08 MAKTGVFDSDPKVMGKATELKRELQRLIVAIIDDDNYSTDTIDNAKEILSALKELKLRKRSRSSSNLFENLICPEEFRCPLSRELMRDPVIVSTGETYDRPFIHKWLKSGNRTCPRTQQVLSHTNLTPNHLIREMISQWCTSRGIELQDRVRVHYLDDDVITEADRDRFLTLIEKMSMTISEQKAAAKELRMLTKRMPSFRALFGESLDAISLLLSPLCGDKSQSISIHTDLQEDVITTLLNLSIHDNNKKLVAETPKVIPLLMEALRSGTMETRSNAAAALFTLSALDSNKAIIGKAGALKPLIDLLDEGHPLSIKDAASAIFNLCIIHENKARAVRDGAVRVLLKKIMNQMHVDELLAILAMLSSHQKAIEEIGELGAVPFLLRIIRESPCSRNKENCIVIIHAICLYDRTKWKDMREEEKCYRTISELAQNGTSRAKRKASGILERLNRVVNMTHTA 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19154644 19156530 - Lsi05G011400.1 Lsi05g01140 663632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01140 460 Pfam Armadillo/beta-catenin-like repeat 291 327 IPR000225 GO:0005515
Lsi05g01140 460 SUPERFAMILY ARM repeat 182 450 IPR016024 -
Lsi05g01140 460 Gene3D - 210 355 IPR011989 -
Lsi05g01140 460 Gene3D - 356 455 IPR011989 -
Lsi05g01140 460 CDD RING-Ubox_PUB 77 119 IPR045210 -
Lsi05g01140 460 SMART Ubox_2 76 139 IPR003613 GO:0004842|GO:0016567
Lsi05g01140 460 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 6 458 - -
Lsi05g01140 460 PANTHER U BOX DOMAIN-CONTAINING 6 458 - -
Lsi05g01140 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 146 IPR013083 -
Lsi05g01140 460 ProSiteProfiles U-box domain profile. 72 146 IPR003613 GO:0004842|GO:0016567
Lsi05g01140 460 Pfam U-box domain 74 143 IPR003613 GO:0004842|GO:0016567
Lsi05g01140 460 SUPERFAMILY RING/U-box 73 149 - -
Lsi05g01140 460 SMART arm_5 246 287 IPR000225 GO:0005515
Lsi05g01140 460 SMART arm_5 288 328 IPR000225 GO:0005515
Lsi05g01140 460 SMART arm_5 368 409 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01140 Lsi-Chr5:19154644 Lsi11g00916 Lsi-Chr11:12641850 1.68E-117 dispersed
Lsi05g01140 Lsi-Chr5:19154644 Lsi10g01368 Lsi-Chr10:17834008 6.30E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01140 - - csv:101215688 809.675