Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi05g01149 | ATGTTTAATTACTTCTTCTTCTTCTTCTTCATTCTGTTAGTTCACTGTAAATCTTCTGAAATTGCTGCTGGTGCTCGTAGATTGCTTCACCAGCCATTTTTCCCACTTGATTCTGTTCCTCCGGCCGAGCCGCCGTCGACTCCGATACCGCCGCCACCGAATCCCAAGTACCCATTTTCCACTACCCCTCCTGCTAATCCTGATGGGTCTCCATTTTTTCCGACGTATCCTGGAACCCCACCTCCTCCGGCCCCGGCGAGTTTCGCATCGTTTCCGGCTAATATTTCTTCTCTGATTCTACCTCATTCCTCTCAATCTGGTTCAGGTTCCAAGAAGCTTGTTCCGTTGGTTATTGCTGGGGTTGTTTCTGTTCTCTTGGTTGTCTGCATTGCTGGGTTTTTGTACTGGCGGAGGCGGCGTGGTCGTGGGTTGGGCGATGACAAGACGTACAGATCCGAAAATAGTAGCCGGTTGTGTCCGGTACCGAATGTTGAAGTCGGTAATGGAATCCCTAAGTTGAGACATCCCTCTGCTACTAGCTCTGAGTTTCTGTATTTGGGTACTCTTGTAAACTCGAGAGCTATCGATGAGCGTTCCGTTGGGGGAGCTCGTGTTGCTGATCCTAGGCCGTTGGATTCGCCGGAGCTTCATCCACTTCCGCCGCTGAATTTTGGTCGGTCGAGTGAGAAGCAAAATTGCGGAAATGGAGAGGAGAGATCGATGGGAGATGAGGAGGAAGAGGAATTTTACTCTCCTAAAGGTTCTCTCGGCGCAATTGGCTCGGGATCTCGAAGAGTGCTCGCAACAATGGCGGCTGAAGATTTGCTTGGGAAAACCAGTGATTCGAGCACCACTTCCTATTCCACATCCAGCGGTTCCGTTTCGCCGGCGAGATCACGTTCTAAGAGTCTCTCTCTATCTCCACCGGCGAGTTTGAGCCCTAGAAGATCCGTTCAAAATGAATCTTCTAATTTCTCTGTTTCTGCCACTGTAGCGACGGAGCAGCATTCGCCACCATTAACGCCGCCGCTTTCCCACGGCGGGGTGGAATCAGACGACGGCGTTAAATCCCATTGCCCATCTCCAATGCGTTTATCGACGGACAAAGTTCCGGAGAAAAACTCCACGGCATCTTCATCCCGGAGATATTCTAATGTTTCAATTCACAGTGTGATGTTCCCAATTTCAACAACCGATAAGGATTTAGTTAATCATGCTGATACGAACAATAATCACGAAGAATCTCCAAGACAATCCCATAATTCAGATCCAGACGAGCCGTTTCCATTTTCTCCTTGTTTATTTCCTCTTTCAGATGGAATTTTAGGGCAAATTCAGATTCAATTGCCCACAGTTTCAAACATTCCCGATTCGGATTCTGAAGCAAAACTTAAGCAACTTCCTTATTCGTTTACTTCATCTTCACCATCATCGTCACCGGAGAGAGTAATTATGGACTCGTCTCCGTCAAGAGCATCCATTATTTCAGATCAAAACAGGTCTTCTCCACCATCACCAGAGAGAATCGTGTTGGATGATTCAGATTCATCAAAGAAAACCTCAAACCATTTTGATCAAGATGTGAAATCTTCACCAGAGAGAATTGTGTTGAGTGATTCAGATTCATCAAAGATAACCTCAGACCATTTTGATCAAGATGTGAAATCTTCTTCTGCTGACATCAATACCACTGATGTGGGTCAGCTGCAATCTCATTCGGGTGCATCCACCGCTCCTCCGCCACCTCCACCACCTCCACCGCCTCCTCCACCACCCCCACCACTGGTAGCCCCTCTGCCAGAACGCTGGGAAATCCCCATTTCTCCTTCAACACCAATGGACCAATCCATTCCAAAGGCGCCTCCTCCATTAGTGCCTCCATTAAGGCCATTTATAATGGAGAATGTGAAAAATGTCTCACCAATTCAGTTGCCATCCTGCAAAAGCAATGGTGAGTCCTCTGAAGACACCCCCAAGCCCAAGTTGAAGCCATTGCATTGGGACAAAGTAAGGGCCAGTTCTGATCGTGAGATGGTGTGGGATCAACTCAGATCAAGCTCTTTTAAAGTGAATGAGGAAATGATTGAAACTCTGTTTATTGTGAACACTTCCAATTCAAAGGAGACAACTCCACGCACTGTGCTTCCTCCACCTAACCAAGAGATCGGAGTTCTCGATCCCAAAAAGTCGCAGAACATTGCAATTGCGTTACGGGCACTTAATGTGACCATAGAAGAAGTTTGTGATGCCCTTTTAGAAGGTAATGCAGATGCACTTGGTGCAGAGCTACTTGAAAGTTTATTGAAGATGGCTCCTACGAAGGAAGAAGAACGTAAACTAAAGGCATCCAAGGATGTCTCACCTACAAAGTTTGGCCCTGCTGAGAAATTTTTGAAGGCAGTCCTTGATGTTCCTTTTGCATTTAAAAGGGTGGATGCAATGCTTTACATAGCAAATTTCGAGTCCGAGATTGAGTACCTAAAGAAATCGTTCGAAAATCTCGAGACTGCTTGCGAGGAATTGAGGAATAGCAGGATGTTCTTGAAACTTTTGGAAGCTGTGCTCAAGACCGGGAATCGAATGAATGTTGGCACCAACCGTGGCGATGCCCACGCCTTCAAACTCGACACACTTTTGAAACTTGTTGATGTCAAGGGTGCAGATGGAAAAACCACTCTTCTGCATTTTGTTGTACAAGAAATCATAAGAAGTGAAGGAGCTCGTCTTTGTGTCACGAGTCAAATTCCAAACTCCAACCCGAGTGATGATGCCAAATGCAGGAAACTCGGCCTGCAAGTTGTTTCAGGTCTCAGCTCGGAGCTTGCCAACGTAAAGAAGGCAGCTTCAATGGATTCCGATGTGCTCAGTGGCGAGGTCATCAAGCTTTCGAGAGGACTCGACAACATCAGAGAGGCTCTACGTCTAAATGAAGCAGAAGGGCCAAATGAAAGCACAGAAAAGTTCTCAGAGTCGATGAGCAGATTCTTGAAAATGGCAGAAGAGGATATTATCAGAGTCCAAGCCCATGAAAGTGTTGCTTTATCTCTAGTAAAGGAGATCACAGAGTATTTCCATGGCAACTCTGCCAAAGAAGAAGCTCATCCATTTAGAATTTTCATGGTGGTGAGAGATTTCCTAACAATTCTTGATGGAGTCTGCAAAGAAGTTGGGATGATAAACGAGCGGACGATCGTAAGTTCCGCCCATAAATTTCCAGTTCCAGTGAATCCAACATTACCACAAGCATTTCAAGCTCTTCATAGAGTGCAGAAATACAATTGTTCTGATGAAGAAAGTGAACAATCCCCATAA | 3312 | 46.04 | MFNYFFFFFFILLVHCKSSEIAAGARRLLHQPFFPLDSVPPAEPPSTPIPPPPNPKYPFSTTPPANPDGSPFFPTYPGTPPPPAPASFASFPANISSLILPHSSQSGSGSKKLVPLVIAGVVSVLLVVCIAGFLYWRRRRGRGLGDDKTYRSENSSRLCPVPNVEVGNGIPKLRHPSATSSEFLYLGTLVNSRAIDERSVGGARVADPRPLDSPELHPLPPLNFGRSSEKQNCGNGEERSMGDEEEEEFYSPKGSLGAIGSGSRRVLATMAAEDLLGKTSDSSTTSYSTSSGSVSPARSRSKSLSLSPPASLSPRRSVQNESSNFSVSATVATEQHSPPLTPPLSHGGVESDDGVKSHCPSPMRLSTDKVPEKNSTASSSRRYSNVSIHSVMFPISTTDKDLVNHADTNNNHEESPRQSHNSDPDEPFPFSPCLFPLSDGILGQIQIQLPTVSNIPDSDSEAKLKQLPYSFTSSSPSSSPERVIMDSSPSRASIISDQNRSSPPSPERIVLDDSDSSKKTSNHFDQDVKSSPERIVLSDSDSSKITSDHFDQDVKSSSADINTTDVGQLQSHSGASTAPPPPPPPPPPPPPPPPLVAPLPERWEIPISPSTPMDQSIPKAPPPLVPPLRPFIMENVKNVSPIQLPSCKSNGESSEDTPKPKLKPLHWDKVRASSDREMVWDQLRSSSFKVNEEMIETLFIVNTSNSKETTPRTVLPPPNQEIGVLDPKKSQNIAIALRALNVTIEEVCDALLEGNADALGAELLESLLKMAPTKEEERKLKASKDVSPTKFGPAEKFLKAVLDVPFAFKRVDAMLYIANFESEIEYLKKSFENLETACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRSEGARLCVTSQIPNSNPSDDAKCRKLGLQVVSGLSSELANVKKAASMDSDVLSGEVIKLSRGLDNIREALRLNEAEGPNESTEKFSESMSRFLKMAEEDIIRVQAHESVALSLVKEITEYFHGNSAKEEAHPFRIFMVVRDFLTILDGVCKEVGMINERTIVSSAHKFPVPVNPTLPQAFQALHRVQKYNCSDEESEQSP | 1103 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 19328641 | 19333341 | - | Lsi05G011490.1 | Lsi05g01149 | 663641 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi05g01149 | 1103 | MobiDBLite | consensus disorder prediction | 368 | 383 | - | - | |
| Lsi05g01149 | 1103 | Gene3D | Formin, FH2 domain | 657 | 1070 | IPR042201 | - | |
| Lsi05g01149 | 1103 | MobiDBLite | consensus disorder prediction | 278 | 383 | - | - | |
| Lsi05g01149 | 1103 | MobiDBLite | consensus disorder prediction | 576 | 600 | - | - | |
| Lsi05g01149 | 1103 | MobiDBLite | consensus disorder prediction | 41 | 70 | - | - | |
| Lsi05g01149 | 1103 | MobiDBLite | consensus disorder prediction | 556 | 575 | - | - | |
| Lsi05g01149 | 1103 | MobiDBLite | consensus disorder prediction | 468 | 505 | - | - | |
| Lsi05g01149 | 1103 | MobiDBLite | consensus disorder prediction | 401 | 432 | - | - | |
| Lsi05g01149 | 1103 | SMART | it6_source | 652 | 1064 | IPR015425 | - | |
| Lsi05g01149 | 1103 | MobiDBLite | consensus disorder prediction | 405 | 421 | - | - | |
| Lsi05g01149 | 1103 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 583 | 1060 | - | - | |
| Lsi05g01149 | 1103 | PANTHER | FORMIN-LIKE PROTEIN 1 | 5 | 1101 | - | - | |
| Lsi05g01149 | 1103 | MobiDBLite | consensus disorder prediction | 278 | 340 | - | - | |
| Lsi05g01149 | 1103 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 652 | 1075 | IPR015425 | - | |
| Lsi05g01149 | 1103 | MobiDBLite | consensus disorder prediction | 511 | 534 | - | - | |
| Lsi05g01149 | 1103 | Pfam | Formin Homology 2 Domain | 654 | 1049 | IPR015425 | - | |
| Lsi05g01149 | 1103 | Coils | Coil | 817 | 844 | - | - | |
| Lsi05g01149 | 1103 | MobiDBLite | consensus disorder prediction | 198 | 257 | - | - | |
| Lsi05g01149 | 1103 | MobiDBLite | consensus disorder prediction | 468 | 625 | - | - | |
| Lsi05g01149 | 1103 | MobiDBLite | consensus disorder prediction | 642 | 663 | - | - | |
| Lsi05g01149 | 1103 | PANTHER | FORMIN-RELATED | 5 | 1101 | IPR027643 | GO:0003779|GO:0030036|GO:0045010|GO:0051015 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g01249 | Lsi-Chr4:19469447 | Lsi05g01149 | Lsi-Chr5:19328641 | 2.28E-120 | dispersed | |
| Lsi05g01149 | Lsi-Chr5:19328641 | Lsi11g00020 | Lsi-Chr11:225806 | 7.60E-12 | dispersed | |
| Lsi05g01149 | Lsi-Chr5:19328641 | Lsi10g00514 | Lsi-Chr10:7336609 | 1.79E-177 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi05g01149 | - | - | bhj:120077761 | 1823.91 |