Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi05g01167 | ATGGCGTCGAAGAGGATCTTGAAGGAACTCAAGGATTTGCAGAAGGACCCGCCTACATCATGTAGCGCTGGTCCAGTTGCCGAAGACATGTTTCATTGGCAAGCTACCATAATGGGTCCTCCAGACAGTCCTTATGCTGGGGGTGTATTCCTTGTCACGATTCATTTTCCTCCAGATTATCCTTTTAAGCCTCCTAAGGTGGCATTCAGAACAAAGGTTTTCCACCCAAATATCAACAGCAATGGTAGTATTTGCCTTGACATTTTGAAAGAGCAGTGGAGCCCTGCCCTAACTATTTCCAAGGTCTTACTTTCAATCTGTTCACTGTTGACGGATCCAAATCCGGATGACCCACTCGTGCCTGAGATCGCTCACATGTACAAGACTGACAGGAACAAATATGAGACAACTGCTAGGAGCTGGACGCAGAAGTATGCGATGGGCTAA | 447 | 46.76 | MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAMG | 148 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 19606720 | 19610290 | - | Lsi05G011670.1 | Lsi05g01167 | 663659 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi05g01167 | 148 | Gene3D | Ubiquitin Conjugating Enzyme | 1 | 148 | IPR016135 | - | |
| Lsi05g01167 | 148 | ProSitePatterns | Ubiquitin-conjugating (UBC) active site signature. | 74 | 89 | IPR023313 | - | |
| Lsi05g01167 | 148 | SUPERFAMILY | UBC-like | 2 | 147 | IPR016135 | - | |
| Lsi05g01167 | 148 | ProSiteProfiles | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 147 | IPR000608 | - | |
| Lsi05g01167 | 148 | PANTHER | UBIQUITIN-CONJUGATING ENZYME E2 | 3 | 145 | - | - | |
| Lsi05g01167 | 148 | CDD | UBCc | 3 | 142 | IPR000608 | - | |
| Lsi05g01167 | 148 | Pfam | Ubiquitin-conjugating enzyme | 5 | 141 | IPR000608 | - | |
| Lsi05g01167 | 148 | PANTHER | BNAA01G32320D PROTEIN | 3 | 145 | - | - | |
| Lsi05g01167 | 148 | SMART | ubc_7 | 4 | 147 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi05g01167 | - | - | K06689 | fve:101297588 | 314.309 |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g00447 | Lsi-Chr4:4299707 | Lsi05g01167 | Lsi-Chr5:19606720 | 3.42E-44 | dispersed | |
| Lsi04g00451 | Lsi-Chr4:4306573 | Lsi05g01167 | Lsi-Chr5:19606720 | 2.74E-42 | dispersed | |
| Lsi05g01167 | Lsi-Chr5:19606720 | Lsi10g01489 | Lsi-Chr10:19061529 | 3.02E-88 | dispersed | |
| Lsi09g01145 | Lsi-Chr9:18356277 | Lsi05g01167 | Lsi-Chr5:19606720 | 5.05E-43 | dispersed | |
| Lsi11g01069 | Lsi-Chr11:18680659 | Lsi05g01167 | Lsi-Chr5:19606720 | 3.38E-26 | dispersed | |
| Lsi01g01055 | Lsi-Chr1:8757168 | Lsi05g01167 | Lsi-Chr5:19606720 | 2.75E-12 | transposed | |
| Lsi01g01627 | Lsi-Chr1:14640705 | Lsi05g01167 | Lsi-Chr5:19606720 | 3.20E-83 | transposed | |
| Lsi02g01370 | Lsi-Chr2:18524166 | Lsi05g01167 | Lsi-Chr5:19606720 | 3.55E-29 | transposed | |
| Lsi05g01587 | Lsi-Chr5:23651354 | Lsi05g01167 | Lsi-Chr5:19606720 | 5.05E-19 | transposed | |
| Lsi07g00639 | Lsi-Chr7:6817895 | Lsi05g01167 | Lsi-Chr5:19606720 | 8.36E-15 | transposed | |
| Lsi08g01094 | Lsi-Chr8:19545344 | Lsi05g01167 | Lsi-Chr5:19606720 | 4.18E-26 | transposed | |
| Lsi09g00193 | Lsi-Chr9:2006813 | Lsi05g01167 | Lsi-Chr5:19606720 | 3.16E-108 | transposed | |
| Lsi10g00190 | Lsi-Chr10:3176271 | Lsi05g01167 | Lsi-Chr5:19606720 | 1.83E-26 | transposed | |
| Lsi02g01936 | Lsi-Chr2:25282028 | Lsi05g01167 | Lsi-Chr5:19606720 | 1.32E-95 | transposed | |
| Lsi04g00060 | Lsi-Chr4:745625 | Lsi05g01167 | Lsi-Chr5:19606720 | 5.96E-31 | transposed | |
| Lsi07g00235 | Lsi-Chr7:2612435 | Lsi05g01167 | Lsi-Chr5:19606720 | 8.91E-22 | transposed | |
| Lsi07g00875 | Lsi-Chr7:9944412 | Lsi05g01167 | Lsi-Chr5:19606720 | 4.84E-37 | transposed | |
| Lsi10g01075 | Lsi-Chr10:15018604 | Lsi05g01167 | Lsi-Chr5:19606720 | 1.37E-27 | transposed | |
| Lsi05g01167 | Lsi-Chr5:19606720 | Lsi05g02092 | Lsi-Chr5:27749881 | 1.81E-93 | wgd | |
| Lsi05g01167 | Lsi-Chr5:19606720 | Lsi09g00043 | Lsi-Chr9:389415 | 5.33E-110 | wgd |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi16g857 | Blo06g01071 | Blo15g00101 | Bda05g00107 | . | Bpe03g00169 | . | Bma10g01274 | Bma14g01988 | . | Cmo18g01322 | . | . | . | . | Sed01g3831 | . | . | Bhi01g01436 | Tan01g0162 | Cmetu06g1241 | . | . | Mch10g0101 | . | Cla01g00205 | . | . | . | . | . | . | . | . | . | . | Lsi05g01167 | Csa05g00072 | . | . | . | . | . | Bda15g00771 | . | Bpe12g00368 | . | . | . | . | . | . | Cma18g01293 | . | . | . | . | Bhi12g00607 | . | . | . | Hepe06g0766 | . | . | Cla05g00940 | Cam05g1029 | Cec05g1032 | Cco05g1028 | Clacu05g1018 | Cmu05g0971 | Cre05g1050 | . | . | . | Cme09g01822 |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0000093 | 10 | 14 | 5 | 8 | 10 | 8 | 7 | 6 | 4 | 8 | 8 | 6 | 9 | 8 | 9 | 10 | 7 | 11 | 12 | 3 | 8 | 8 | 10 | 7 | 4 | 8 | 8 | 13 | 15 | 7 | 251 |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lsi05g01167 | Lsi_Chr05 | FPKM | 9.341145 | 11.088021 | 9.661593 | 9.717462 | 9.045322 | 8.574886 | 8.857513 | 12.221147 | 11.084862 | 11.739098 |