Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01168 ATGATGAAGAATAGCTTCATCTTCCTTGAAATTTTATTGTTTTTAGCATTCATCTGGCCGGGGGTTTTCACTGAGCCAGTTGAAGATAAGCAAGCCTTGCTTGATTTCTTCCATAATATCCCCCACTCGCCCTCTCTCAACTGGAATGAGAGTAATTCTGTGTGCAAAACCTGGACAGGAGTGTTTTGCAATTCTGATGAGTCCAGAGTAGTAGCCTTACGATTACCCGGGACTGGTCTGCGTGGCCCGATCCCTGCGAATACTCTCAGCCGCCTAACTGCGCTCGAGATTCTAAGCCTTAGGTTAAATAGGATATCAGGTCCTTTCCCTTTTGATTTTTCAAAGCTGGAAAACTTGAGTTCCTTGTATTTGCAATACAACAAGTTTTCTGGTCCTTTGCCTTTAGATTTTTCAGTTTGGAATAACCTTAGTGTCATTGATCTATCGAACAATCTCTTTAATGGGAGTATTCCTTCCTCTATCTCAAACTTGAGTCATTTGACAGTTTTGAATCTTGCAAACAACTCGTTTTCAGGTGAAATTCCGAACCTTGATATTCCGAGTTTGCAACGGTTAGATTTGTCCAATAATAATCTTACAGGAAATGTGCCTCACTCTCTTCAAAGATTTCCAAGTTGGGTGTTCTCCGGTAACAATGTTACTGAAGAACATAGTGCAGTTCCCCCATCTTTTGCTCTCCAGCCTCCCACTGCTCAACCGATGAGAAAAGGCAAAGGACTGAGTGAATCTGCAATACTTGGTATTGCAATTGGTGGTTCTGTTATTGGATTGATTTTGCTAGCTGTTTTGTTGACTGCTTGCTGGTTGAAAAAACGAAAAGAAAATATGAGTCCCACCATGGAGCCCAAAAAGAAGGAAGCATCTGTGAAGAAAAGGGGCTTTGAGAGCCAAGAACAAAAGAACAACCTCAGTTTCTTTCAGGATTCTAATCTTGCATTTGACTTAGAAGACCTATTGAGAGCATCTGCCGAGGTTCTCGGGAAGGGAACCTTTGGAGTGAGCTACAAGGCAGCTTTGGAGGACTCAACAACTGTTGTAGTGAAGAGGCTGAATCAAGTGACAGTTGGAAAACGAGAATTTGAACAGCAGATGCAGTTGATTGGAAATATTAAGCACGAGAATGTCGTTTCCTTAAGAGCATACTATTATTCAAAGGATGAGAAACTCATGGTGTATGACTACTATGGACAAGGGAGTGTGTCTGCAATGTTACATGGTAAGGAAGGAGATGGCTTACATGTGTTAGATTGGGATACTCGGATGAAAATTGCTATTGGAGCGGCCCGAGGTCTTGCTCATATTCACACAGAAAATGGTGGAAAATGTTCCCATGGAAACGTCAGAGCCTCAAACATTTTCCTCAACTCTAATGGATATGGTTGTGTATCTGACGTTGGCTTGGCTGCATTGATGAATTCAATTCCACTACCAGCCACGAGAACCCCTGGTTACCGAGCACCTGAATTGACCGACACTCGGAGAGTATCAGAAGCAGCTGATGTCTACAGTTTCGGGGTGGTGCTGCTGGAGCTTCTGACTGGAAAATCACCCATACATGTTGAAGGTTGTAATGAAGTTGTTAATTTGGTGAGGTGGGTGAACTCTGTGGTGAGGGAGGAATGGACAGCAGAAGTGTTTGATGTTGAGCTTCTAAGGTATCCAAACATAGAAGAAGAGATGGTGGAGATGCTGCAAATTGGGTTGTCTTGTGTTGCCAAAATGCCTGAGCAGAGGCCGAAAATGATAGATATAACGTCGAGAATCGAGCAAGTTCGGCAACTCAGTACAGGAACGGGACCGTCATCAGGGTCAAAATCAGCGTATTCGACTCCAATTCATGTAATGGAAATCGGTTCTTCCTCACATTCACATTGA 1896 43.09 MMKNSFIFLEILLFLAFIWPGVFTEPVEDKQALLDFFHNIPHSPSLNWNESNSVCKTWTGVFCNSDESRVVALRLPGTGLRGPIPANTLSRLTALEILSLRLNRISGPFPFDFSKLENLSSLYLQYNKFSGPLPLDFSVWNNLSVIDLSNNLFNGSIPSSISNLSHLTVLNLANNSFSGEIPNLDIPSLQRLDLSNNNLTGNVPHSLQRFPSWVFSGNNVTEEHSAVPPSFALQPPTAQPMRKGKGLSESAILGIAIGGSVIGLILLAVLLTACWLKKRKENMSPTMEPKKKEASVKKRGFESQEQKNNLSFFQDSNLAFDLEDLLRASAEVLGKGTFGVSYKAALEDSTTVVVKRLNQVTVGKREFEQQMQLIGNIKHENVVSLRAYYYSKDEKLMVYDYYGQGSVSAMLHGKEGDGLHVLDWDTRMKIAIGAARGLAHIHTENGGKCSHGNVRASNIFLNSNGYGCVSDVGLAALMNSIPLPATRTPGYRAPELTDTRRVSEAADVYSFGVVLLELLTGKSPIHVEGCNEVVNLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGLSCVAKMPEQRPKMIDITSRIEQVRQLSTGTGPSSGSKSAYSTPIHVMEIGSSSHSH 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19611775 19615215 - Lsi05G011680.1 Lsi05g01168 663660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01168 631 Pfam Protein tyrosine and serine/threonine kinase 331 594 IPR001245 GO:0004672|GO:0006468
Lsi05g01168 631 Gene3D Ribonuclease Inhibitor 27 234 IPR032675 -
Lsi05g01168 631 SMART LRR_sd22_2 140 166 - -
Lsi05g01168 631 SMART LRR_sd22_2 92 121 - -
Lsi05g01168 631 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Lsi05g01168 631 Pfam Leucine Rich Repeat 188 209 IPR001611 GO:0005515
Lsi05g01168 631 SUPERFAMILY L domain-like 38 212 - -
Lsi05g01168 631 PANTHER LRR RECEPTOR-LIKE KINASE 17 622 - -
Lsi05g01168 631 PANTHER OS05G0588300 PROTEIN 17 622 - -
Lsi05g01168 631 ProSiteProfiles Protein kinase domain profile. 327 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01168 631 SUPERFAMILY Protein kinase-like (PK-like) 331 595 IPR011009 -
Lsi05g01168 631 Gene3D Phosphorylase Kinase; domain 1 292 401 - -
Lsi05g01168 631 Gene3D Transferase(Phosphotransferase) domain 1 403 608 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01168 Lsi-Chr5:19611775 Lsi10g01489 Lsi-Chr10:19061529 0 dispersed
Lsi02g01848 Lsi-Chr2:24240961 Lsi05g01168 Lsi-Chr5:19611775 2.08E-69 transposed
Lsi09g00194 Lsi-Chr9:2018164 Lsi05g01168 Lsi-Chr5:19611775 0 transposed
Lsi05g01168 Lsi-Chr5:19611775 Lsi09g00046 Lsi-Chr9:402193 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83651 PF07714 PK_Tyr_Ser-Thr 5.90E-33 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01168 - - csv:101207123 1148.27