Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01173 ATGTCACAGGTGGTAGCTACCAGGTCGATTCACAGCACATTCCTATGCCCTAGCTCGGGATCTGTGCAAGAACGAGTTGACAGGGCTCGGTCTTTTGGTATTGGCTCCAAAGTGTTGGCGCATGAGAAGAAGAGTTGGAATTTTGTTTACAGGAGAAGTCTAATCACATCCAAGAGAGCTGCTCAAGCTGAAGTTGTTCCGGTATCACCTGAGGATGTTCAGAAGGCAGATGAGCAATTTGAACATTTACGAGCAGTTCAACAGCTTGGGGATACACCGGTTGGTATGTGGTCGAAGCCAACAGTTAGACGTAAGACCAAGATCGTGTGCACGATTGGACCTTCGACTAACACGAAGGAAATGATTTGGAAACTGGCTGAGGCTGGAATGAATGTTGCTCGATTGAATATGTCTCATGGAGACCATGCATCTCATCAGAAAGTTATAGATTTAGGTCCCGAGGTTAGGAGCGGTGACCTACCACAACCAATATTGTTAGAAAGTGGACAGGAATTCACTTTTACCATACGGAGAGGTGTTAGCACTGCAGATTCTGTCAGTGTGAACTACGATGATTTTGTTAATGATGTTGAAGTTGGGGACATGCTTCTTGTTGATGGTGGAATGATGTCGCTGATGGTGAAGTCTAAGACAGAAGATTCTGTCAAGTGTGAAGTTATTGATGGAGGAGAGCTCAAGTCCAGGCGACATTTAAATGTTCGAGGAAAAAGTGCTACACTGCCTTCAATTACTGAGAAGGATTGGGATGATATTAAATTTGGAGTTGACAACGAAGTTGATTTTTATGCTGTCTCATTCGTCAAAGATGCACAAGTAGTTCATGAGTTGAAGAAATATCTCAAGAGCTGTGATGCTGATATTCATGTGATTGTAAAAATAGAAAGTGCAGACTCCATACCAAATTTGCATTCAATTATTACAGCTTCTGATGGGGCAATGGTTGCCAGAGGCGATCTTGGTGCAGAACTCCCTATTGAGGAGGTTCCACTTCTGCAGGAGGAGATAATCAACCTGTGTCGAGGCATGGGGAAGGCTGTCATTGTGGCTACTAACATGCTTGAGAGTATGATTGTTCATCCGACACCAACCAGAGCAGAAGTATCTGACATTGCTATTGCAGTTAGAGAGGGTGCTGATGCAATCATGTTGTCTGGAGAAACCGCTCATGGAAAATTCCCATTAAAAGCTGTGAAAGTAATGCATACAGTTGCTTTACGGACTGAAGCAACTATAGAAGGTGGTCGAATGCCATTGAATCTCGGTCAAACATTCAAGAACCATATGAGCGAGATGTTTGCTTATCATGCAACAATGATGTCCAACACTCTTGGAACCTCAATAGTTGTCTTCACTAGAACTGGTTTCATGGCTATCCTCCTTAGCCACTATCGACCATCTGGCACAACATTTGCCTTTACAAATGATAAAAGGATACAACAGAGGTTGGCTTTGTATCAAGGAGTGTGCCCCATATACATGAAGTTCTCTGATGATGCTGAGCAGACCTTTACTGATGCCTTATCTATGCTGCAGGAAGGAGAAGAGGTAGCACTCCTTCAGAGTGGCAGACAACCAATATGGCGGTTCCCATCTACTCACAATATTCAAGTCCGTAAAGTGTAG 1644 43.61 MSQVVATRSIHSTFLCPSSGSVQERVDRARSFGIGSKVLAHEKKSWNFVYRRSLITSKRAAQAEVVPVSPEDVQKADEQFEHLRAVQQLGDTPVGMWSKPTVRRKTKIVCTIGPSTNTKEMIWKLAEAGMNVARLNMSHGDHASHQKVIDLGPEVRSGDLPQPILLESGQEFTFTIRRGVSTADSVSVNYDDFVNDVEVGDMLLVDGGMMSLMVKSKTEDSVKCEVIDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNEVDFYAVSFVKDAQVVHELKKYLKSCDADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIINLCRGMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAIMLSGETAHGKFPLKAVKVMHTVALRTEATIEGGRMPLNLGQTFKNHMSEMFAYHATMMSNTLGTSIVVFTRTGFMAILLSHYRPSGTTFAFTNDKRIQQRLALYQGVCPIYMKFSDDAEQTFTDALSMLQEGEEVALLQSGRQPIWRFPSTHNIQVRKV 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19656033 19661420 - Lsi05G011730.1 Lsi05g01173 663665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01173 547 Pfam Pyruvate kinase, barrel domain 104 150 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi05g01173 547 Pfam Pyruvate kinase, barrel domain 152 419 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi05g01173 547 SUPERFAMILY PK C-terminal domain-like 402 546 IPR036918 -
Lsi05g01173 547 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 96 418 IPR015813 GO:0003824
Lsi05g01173 547 Pfam Pyruvate kinase, alpha/beta domain 441 520 IPR015795 -
Lsi05g01173 547 Gene3D - 152 411 IPR040442 -
Lsi05g01173 547 ProSitePatterns Pyruvate kinase active site signature. 294 306 IPR018209 GO:0004743|GO:0006096
Lsi05g01173 547 Gene3D - 428 534 IPR036918 -
Lsi05g01173 547 Gene3D - 104 150 IPR040442 -
Lsi05g01173 547 PANTHER PYRUVATE KINASE 36 547 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi05g01173 547 Gene3D - 154 247 IPR015806 GO:0004743|GO:0006096
Lsi05g01173 547 TIGRFAM pyruv_kin: pyruvate kinase 152 520 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi05g01173 547 SUPERFAMILY PK beta-barrel domain-like 153 244 IPR011037 -
Lsi05g01173 547 PRINTS Pyruvate kinase family signature 323 347 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi05g01173 547 PRINTS Pyruvate kinase family signature 142 158 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi05g01173 547 PRINTS Pyruvate kinase family signature 392 408 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi05g01173 547 PRINTS Pyruvate kinase family signature 266 280 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi05g01173 547 PRINTS Pyruvate kinase family signature 296 322 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi05g01173 547 PRINTS Pyruvate kinase family signature 373 391 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi05g01173 547 PRINTS Pyruvate kinase family signature 348 372 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Lsi05g01173 547 PANTHER PLASTIDIAL PYRUVATE KINASE 2 36 547 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01173 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - csv:101206887 1031.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00060 Lsi-Chr5:1206426 Lsi05g01173 Lsi-Chr5:19656033 0 dispersed
Lsi05g01173 Lsi-Chr5:19656033 Lsi09g01285 Lsi-Chr9:20707624 8.27E-113 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g836 . . . Bda07g01913 Bpe03g00165 . . . Cmo16g00089 Cmo18g01319 . . Car02g00961 . Sed05g0275 . Cpe14g00069 Bhi01g01431 Tan01g0170 Cmetu04g2585 . Hepe07g0104 Mch10g0106 . . . . . . . . Cone1ag0946 Cone5ag0665 . . Lsi05g01173 . . Cme06g01059 . Blo09g00048 . . . . . . . . . Cma16g00086 Cma18g01290 Car16g00075 Car18g01207 Cpe09g00052 . . . . . . . . Cla05g00935 Cam05g1022 Cec05g1026 Cco05g1022 Clacu05g1011 Cmu05g0964 Cre05g1045 . Csa03g02178 Chy06g01277 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001502 3 1 2 2 2 2 4 2 2 2 2 2 3 3 2 4 2 4 4 2 2 2 2 2 2 2 2 3 3 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01173 Lsi_Chr05 FPKM 18.29565 19.16861 25.798756 26.763374 19.497059 19.776363 20.559574 34.201603 33.642784 33.052502