Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01174 ATGGAGAATATGCAGTATGCTGAGGAGCTTGTGAGGGAGTTCCTTGTTTTTAGGGGGTTTACAAGTTCTCTTCAATCTTATGAGAGTGAGCTGAGCACAGATATCGGAAAAGGGTTTCAAGTGGACAAGATTTTAGATTTAATCTTCTCAATTTATATACCCAAATTTGAGGCAGAGAAGTTGGTGGGGCTACTAAGTTTTTTCAAGCAGTGCCTTGCTTCATCATCTGACAACACACTACTTTCAACTGTGTCAAAATTGGAGGTTTCCATCCTTCGCTATTATATGGTACATGCCATACAATCAGGAAGGACAGATAAAGTTCTGGAGTTTCTGAAAATAAATGGCAATGATCTACTTCAGAGGACTAAAGATTGGACTCCATGGTTTGCCATGCCATACCTAAAGAATCCAAAGTTTGATCCCAACTTTCACGTTTATTTTACAAAGGAGTGGTATGAAGCGCTGCATGTTTCTGTAAGGAATTTCTTCAGCGAAGTCTTCAATGGTACTCGCATTCCTGCCCTGCTAAAGCTCAGTTCAGAGAAGAATACAGTTAATCATCTGAAAAGAGATATCAAGCAGTTAAATCTTAAATTAGCACAACTTCAGGCTTTATTGGAGGAAAAGGAGGCTCATCTTTGCCACTTAAGAAGCCCGGTGAACAGTTCTTCGAGTGTGATGCACGAAGAGAATGCTACTTCATCAAATGATGCTCAGGAGACTTGTCCCCCTCCAACTACACAAGTTGGGGAAACACAGCTGGCTCGAGATGGGATTTTAGCTGGCTCTGACAAGTATACGGCTTCAAATGAAGATTCAAGTTCTTTATTAACTATTTGCTCGGGAGACGGTGAAGTTGGTGATCCTAATCATAGTTGTGAAGATGGTCGTCAAATGGTGAATAGCGGAGACGTCCATGTACAAGAAGACTTTCCTGAAGTGAAAGTAGAATTTCAGGAGACATTTTTGGGCCACACAAGTCCAATCAGTCGTTGCCGTTTTTCTGCATCTGGAAACAATGTAGCAAGTGCTTCTTTGGATGGTACAGTCAGGATATGGACATATGACTCATCCACTCCAGCATCTAGAAATGCAACAATTTACTGTGGAGCAGAGATTATGTCACTTGACTGGGAGTGTAAATCTGATCGCCTGGCTCTTGTATTTTTCTATTGGCAAAAGCTTCTAATAGGCACCGCTGATGCGGGCATTAAAGCATGGAATGTTGATGCAAAGAGAGTTGTGTGTGATCTCAACACTACTGATATGTTCCCTAGCGTGTTGGATATCAAATGCAGTCCTGTTGAATCTATTTTCGTATCTGCAGCAGCATCTAGAGGGCATGGTTCAAGTTATGTGGATAGTTTGGGGTTTGCTTCACTCACAGTATGGAACATGAGAACTTGGAAGTCAATGACAGTCCTTCCTCTGGGTAAGGATCCACCTGCAATCACTTCAATGTGCTTCAATCATAACGGGAAGATTTTAGCAGCTGCTGCTACTGATGGAATGATTCACATGTTTGGTATCCTTCCAATACATTTAAGTGCTAAGTTTTCTTGTAAGACTATCGGTAGTGTAATGTTTTGCGATTCCGAGAGCTCTCTATCTTTGAGACATGAAATGGCTTTGGATGCAAATGGAAAAAGACTCTTGGCTACATCAAATTCAGTGAGAGCTCCCATATACCAGGTGGGTGGTCGTGTGGGTGGATTGAAAACTCTTCCACACACGGCAGCGATAACGACGGTTGATTGGCACCCAACTTTGCCTGTGTTCTTGACTGGATCTGCCGACCACTCAGTTCGAGTTACGTCTATTTCTTGA 1830 42.19 MENMQYAEELVREFLVFRGFTSSLQSYESELSTDIGKGFQVDKILDLIFSIYIPKFEAEKLVGLLSFFKQCLASSSDNTLLSTVSKLEVSILRYYMVHAIQSGRTDKVLEFLKINGNDLLQRTKDWTPWFAMPYLKNPKFDPNFHVYFTKEWYEALHVSVRNFFSEVFNGTRIPALLKLSSEKNTVNHLKRDIKQLNLKLAQLQALLEEKEAHLCHLRSPVNSSSSVMHEENATSSNDAQETCPPPTTQVGETQLARDGILAGSDKYTASNEDSSSLLTICSGDGEVGDPNHSCEDGRQMVNSGDVHVQEDFPEVKVEFQETFLGHTSPISRCRFSASGNNVASASLDGTVRIWTYDSSTPASRNATIYCGAEIMSLDWECKSDRLALVFFYWQKLLIGTADAGIKAWNVDAKRVVCDLNTTDMFPSVLDIKCSPVESIFVSAAASRGHGSSYVDSLGFASLTVWNMRTWKSMTVLPLGKDPPAITSMCFNHNGKILAAAATDGMIHMFGILPIHLSAKFSCKTIGSVMFCDSESSLSLRHEMALDANGKRLLATSNSVRAPIYQVGGRVGGLKTLPHTAAITTVDWHPTLPVFLTGSADHSVRVTSIS 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19662866 19670708 - Lsi05G011740.1 Lsi05g01174 663666

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01174 609 Pfam WD domain, G-beta repeat 321 354 IPR001680 GO:0005515
Lsi05g01174 609 Pfam WD domain, G-beta repeat 575 605 IPR001680 GO:0005515
Lsi05g01174 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 364 IPR001680 GO:0005515
Lsi05g01174 609 Gene3D - 394 609 IPR015943 GO:0005515
Lsi05g01174 609 Gene3D - 210 393 IPR015943 GO:0005515
Lsi05g01174 609 PANTHER OS05G0299300 PROTEIN 1 510 - -
Lsi05g01174 609 PANTHER OS05G0299300 PROTEIN 528 608 - -
Lsi05g01174 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 575 609 - -
Lsi05g01174 609 SUPERFAMILY WD40 repeat-like 319 606 IPR036322 GO:0005515
Lsi05g01174 609 SMART WD40_4 469 510 IPR001680 GO:0005515
Lsi05g01174 609 SMART WD40_4 316 355 IPR001680 GO:0005515
Lsi05g01174 609 SMART WD40_4 569 607 IPR001680 GO:0005515
Lsi05g01174 609 Coils Coil 179 213 - -
Lsi05g01174 609 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 358 - -
Lsi05g01174 609 MobiDBLite consensus disorder prediction 222 250 - -
Lsi05g01174 609 ProSiteProfiles Trp-Asp (WD) repeats profile. 575 609 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01174 K24760 WDR91; WD repeat-containing protein 91 - bhj:120087923 1094.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01174 Lsi-Chr5:19662866 Lsi01g00842 Lsi-Chr1:6715721 3.19E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g823 . . Bda05g00106 . Bpe03g00248 . Bma10g01272 . Cmo16g00090 . . . . . Sed13g0100 . Cpe14g00070 Bhi01g01430 Tan01g0171 Cmetu06g1598 . Hepe07g0105 Mch10g0107 . . . . . . . . . . Cone14ag0043 . Lsi05g01174 . . Cme06g01058 Blo07g00355 . . . . . . . . . . . . Car16g00076 . . . . . . . . . . Cla05g00934 Cam05g1021 Cec05g1025 Cco05g1021 Clacu05g1010 Cmu05g0963 Cre05g1044 . Csa03g02177 Chy06g01279 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010151 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01174 Lsi_Chr05 FPKM 7.382686 7.269263 10.025664 11.771768 6.033685 7.857709 7.094134 9.126715 8.532182 9.528608