Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01175 ATGGCTCTAGGTGCCAGTTCTTTGTTCTTGGCTTTGGCTTTTGCATGGCTGATCACCACTTGCATGGCCGGTCAAATTGGTATCAAAGCGAAGTTGCTAGCTAGTGATCGGAATCGAGTCTGGCTTTCTGATAATGGCACATTCGCGTTTGGATTTAGTCCGGTAAGTAGTAGCAGTGGTAGCGTTAGTGACCGGTTTCTGCTTGCCATTTGGTTTGCGGAGCTTCCGGGAGATCGAACCGTAATTTGGTCAGCTAATAGAAACTCTCCAGTCTCCAAGAATGCGATTGTGGAGCTCGACGCCACCGGAAACCTCGTCCTCACCGACGGTGCCGGCGCCGCCGTGTGGTCCTCCAACACCTCCGGAGATGGAGCAGAGTTTGCCGTCATGTCGGAATCCGGAAATTTCATCCTCTTCAACGCTGAACGAAGCCCTATTTGGCAGAGCTTTTCACACCCTTCTGATACCCTTCTCCCAAATCAACCTCTATCAGTCTCTTTAGAGCTCGCGACATCAAAATCCCCTTCCCATGGCGGATATTATACCCTAAAAATGCTCCAACAGCGCACCACTCTCAAACTCGCCTTGACTTTCAATTTGCCTGAAAATTACGAGGGTTTGCCCGAATCTTACGCAAATTACTCATACTGGTCGGCCCCTGAAATTTCCAATGTAACAGGGGAAGTCATTGCTGTTTTAGACGAAGGTGGAAGCTTCGGTGTTGTGTATGGTGACTCCTCTAATGGCGCGGTTTATGTTTACAAGAATGATAACGATAATGGCGGATTATCGGCTTCGACAAATCAGTCAATTCGTAATGTACGCACACAAGTTGTTCGACGATTGACCTTAGAGAGTAATGGGAACTTGCGTTTGTATCGATGGGATGATGATGTTAATGGGTCTCGCCAATGGGTGCCGGAATGGGCGGCGGTTTCAAATCCTTGTGATATTGCTGGAATCTGTGGAAATGGGATTTGCTATTTGGATAAAAGCAAGACAAATGCGTCTTGTTCTTGCTTGCCGGGGACCTTCAAGGACAACGGTGGCAGCCAGTGCTTTGAAAATTCATCGTCCGTGGGGAAATGCGGCGGCCAAAATCATCAATCTCCCTCGACTCAGTACAGGATCTCTCCTGTTCAGCAAACAAATTATTATTATTCTGAGTTCTCTGTAATTGCAAATTACAGCGATATCAACACAGTATCAAAGTGTGGTGATGCTTGCTTAACTGATTGTGAGTGTGTTGCTTCTGTTTATGGGCTTGATGATGAGAAGCCTTACTGTTGGGTGTTGAGAAGCTTAGATTTTGGCGGATTTGAGGATGCTGGTTCGACTCTCTTTGTGAAGGTCAGGTCTAATGGCTCAATACCAGAGGCCAACGGACCAGGAGCTGAAGAAGATTCTTCAGGAAGTGCTAAAGAAAAGGCTACGGTAATTCCTATTGTTCTGAGTATGGCTTTTCTGATTGGGCTGCTGTGTCTGTTGTTATATTATAATGTTCATAGAAGGAGAGCTATGAAGAGAGCCATGGAGAGCTCTCTCATCCTGTCTGGTGCTCCCATGAGTTTTACCCACCGTGATTTGCAGGTCCGGACGAACAATTTCTCTGAGGTTCTTGGAACAGGGGGATTTGGAAGTGTATATAAAGGAAGTCTTGGAGATGGGACTCTAGTAGCTGTGAAGAAACTTGACAGAGTTTTCCCTCATGGAGAGAAGGAATTTATAACTGAAGTTAACACAATTGGATCTATGCATCACATGAACTTGGTTCGGCTCTGCGGATACTGCTCAGAAGGATCGCATAGGCTTCTAGTTTATGAGTTTATGAAAAATGGGTCATTGGACAAGTGGATATTTCCGACACATCATAATCAAGACAGAATTTTAGATTGGTCGACTCGGTTTCATGTAGCTGTTGGTACGGCACAAGGGATTGCTTATTTCCATGAGCAATGCAGGAATAGGATCATACATTGTGATATCAAGCCAGAAAACATTCTGTTGGATGAAAACTTTTGTCCCAAAGTTTCAGACTTTGGTCTGGCTAAGCTGATGGGAAGAGAGCACTCGCATGTTGTAACAATGGTGAGAGGGACAAGAGGGTATTTGGCTCCTGAGTGGGTTAGTAATCGCCCCATCACTGTTAAAGCTGATGTTTATAGCTATGGAATGCTTCTGTTGGAGATTGTTGGTGGCAGGAGAAACCTTGATATGTCTTTTGATGCTGAAGACTTCTTCTATCCTGGTTGGGCTTACAAGGAGATGAGGAATGGGACACATTTCAAAGTTGCAGACAGGCGACTAGAAGGTGCAGTGGAGGAAGAAGAGCTTGTTAGAGCATTGAAAGTTGCATTTTGGTGCATTCAAGATGAAGTTGTCACGAGACCAACGATGGGCGACATTGTGAGGATGTTAGAAGGATCGATGGACGTCGACATGCCACCAATGCCACAAACAGTGTTGGAACTGGTTGAGGAAGGGTTGGATCAAGTCTATAGAGCCATGAAAAGAGACATTAATCAGTCAAGTTCCTTCACCATTAATAGCCAGCCTTCATCTTCTTTGGCTACCTGCAGCCATTCCACAATCTCTCCAAGATAG 2604 45.51 MALGASSLFLALAFAWLITTCMAGQIGIKAKLLASDRNRVWLSDNGTFAFGFSPVSSSSGSVSDRFLLAIWFAELPGDRTVIWSANRNSPVSKNAIVELDATGNLVLTDGAGAAVWSSNTSGDGAEFAVMSESGNFILFNAERSPIWQSFSHPSDTLLPNQPLSVSLELATSKSPSHGGYYTLKMLQQRTTLKLALTFNLPENYEGLPESYANYSYWSAPEISNVTGEVIAVLDEGGSFGVVYGDSSNGAVYVYKNDNDNGGLSASTNQSIRNVRTQVVRRLTLESNGNLRLYRWDDDVNGSRQWVPEWAAVSNPCDIAGICGNGICYLDKSKTNASCSCLPGTFKDNGGSQCFENSSSVGKCGGQNHQSPSTQYRISPVQQTNYYYSEFSVIANYSDINTVSKCGDACLTDCECVASVYGLDDEKPYCWVLRSLDFGGFEDAGSTLFVKVRSNGSIPEANGPGAEEDSSGSAKEKATVIPIVLSMAFLIGLLCLLLYYNVHRRRAMKRAMESSLILSGAPMSFTHRDLQVRTNNFSEVLGTGGFGSVYKGSLGDGTLVAVKKLDRVFPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSLDKWIFPTHHNQDRILDWSTRFHVAVGTAQGIAYFHEQCRNRIIHCDIKPENILLDENFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIVGGRRNLDMSFDAEDFFYPGWAYKEMRNGTHFKVADRRLEGAVEEEELVRALKVAFWCIQDEVVTRPTMGDIVRMLEGSMDVDMPPMPQTVLELVEEGLDQVYRAMKRDINQSSSFTINSQPSSSLATCSHSTISPR 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19671667 19678161 - Lsi05G011750.1 Lsi05g01175 663667

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01175 867 Pfam S-locus glycoprotein domain 269 343 IPR000858 GO:0048544
Lsi05g01175 867 Pfam D-mannose binding lectin 80 167 IPR001480 -
Lsi05g01175 867 MobiDBLite consensus disorder prediction 844 867 - -
Lsi05g01175 867 ProSitePatterns Protein kinases ATP-binding region signature. 540 563 IPR017441 GO:0005524
Lsi05g01175 867 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672|GO:0006468
Lsi05g01175 867 PIRSF SRK 1 859 IPR024171 GO:0004674
Lsi05g01175 867 ProSiteProfiles Bulb-type lectin domain profile. 33 151 IPR001480 -
Lsi05g01175 867 Pfam Protein kinase domain 537 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01175 867 SMART blect_4 32 153 IPR001480 -
Lsi05g01175 867 CDD B_lectin 64 153 IPR001480 -
Lsi05g01175 867 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 9 867 - -
Lsi05g01175 867 Gene3D - 33 152 IPR036426 -
Lsi05g01175 867 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 186 IPR036426 -
Lsi05g01175 867 ProSiteProfiles Protein kinase domain profile. 534 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01175 867 SMART serkin_6 534 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01175 867 Gene3D Phosphorylase Kinase; domain 1 498 609 - -
Lsi05g01175 867 SUPERFAMILY Protein kinase-like (PK-like) 513 807 IPR011009 -
Lsi05g01175 867 PANTHER OS07G0415500 PROTEIN 9 867 - -
Lsi05g01175 867 Gene3D Transferase(Phosphotransferase) domain 1 610 822 - -
Lsi05g01175 867 CDD STKc_IRAK 540 808 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01175 - - - bhj:120087538 1666.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02375 Lsi-Chr4:30886200 Lsi05g01175 Lsi-Chr5:19671667 1.27E-114 dispersed
Lsi05g01175 Lsi-Chr5:19671667 Lsi08g00607 Lsi-Chr8:14377769 2.04E-146 dispersed
Lsi07g00458 Lsi-Chr7:4879545 Lsi05g01175 Lsi-Chr5:19671667 1.10E-91 dispersed
Lsi09g00701 Lsi-Chr9:7947731 Lsi05g01175 Lsi-Chr5:19671667 1.68E-103 dispersed
Lsi09g00703 Lsi-Chr9:7967748 Lsi05g01175 Lsi-Chr5:19671667 2.51E-104 dispersed
Lsi05g01175 Lsi-Chr5:19671667 Lsi08g01207 Lsi-Chr8:20602006 2.25E-142 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g820 . . . . . . . . . . . . . . . . . Bhi01g01429 . . . . . . . . . . . . . . . . . Lsi05g01175 . . . . . . . . . . . . . . . . . . Cpe09g00053 . . . . . . . . . . . . . . . . . Chy06g01280 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008718 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83652 PF00069 Pkinase 2.70E-46 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01175 Lsi_Chr05 FPKM 43.523846 43.720436 35.673916 37.282673 49.672634 52.639317 54.37289 72.820702 76.416725 76.338898