Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01180 ATGGCGTCCGATCTCGAAGCCAAGGCTAAGGAAGCGTTTATCGACGACCACTTCGAACTTTCCGTCGACCTCTACACTCAGGCCATCGCTCTTAGTCCGAAGAAATCCGAGCTTTATGTTGACCGCGCTCAGGCCAACATCAAACTCGGCCACTACACTGGTACTGCTCTCTCTCCATTCAATTTCATGTTTCTTACTTTGAAATGGTCCCTTCAATTGATTCTATTCGAGATTTTGGATGATTATATTGGTTTATGGTTTCAATATGAAGAGGCTGTTGCTGATGCGAACAAAGCAATTGAACTTGACCCTTCAAATTCAAAGGCATACTTGCGTAAAGGCACTGCATGTCTGAAGCTCGAGGAGTATCAAACAGCAAAGGTTGCTTTGGAGACAGGCTCTGCTTTGGCCTCAGGAGATTCAAGATTCACGAATTTAATAAAAGAATGTGAAAAACTCATTGCTGGTATTGGCTGCTTGATAATTTACCAGTTTAAATTTGTCGATGAGGATGATAGATCTTCTTTCCAAAGTTTTTGTTATTTGACATCAATGACTATTATTTGGAAAAAGCATTTACATTTTTTCCAATTCATGGATGCCCCCATTTTCATAACAGAGGAAATGGGCGATCTTACACAGGAATCTGTGGAAAATACTGTTCAGGAAAATGTTTTACCAACAAATGACATCGTACCTGCGAGTGATCAACTGCATCAGGCAACAATAGAAGTCAAGCCGAAATTCAGGTTGCTGCTCTTTGTCGGAGTAAATATTTTCTCTCTTTACTTTTTGCCCTTCTTTTCTTTTTGGTCTTCCTCCCAGCTTGAATTGGATAAATGCTTTTGGTACTTTGATTACAAGGTAGATGGAAACCTAACCATACCTTCCGCCAAATACTCATGCAGGCACGAATTTTATCAGAAACCGGAAGAAGTAGTTGTGACCATATTTGCTAAGGGAATGCCAGCTGAAAATGTTATTGTTGAATTTGGTGAACAAATTCTAAGTGTGACTATTGATCTTCCTGGCGAAGATGCATATCATTTCCAGACTCGTTTATTTGGGAAGAGACAATTGAGGGGTTCTATTTATTATCCAAAACAAGATGGAATGTTTATTCTTCACGCGTATTTTTCTTCTTTCTGTTGCAATGGATTGGTTTCCTTACATTTCTTTTCCTTCTTATTTGAGCATTTGTTTCCTCCAGCAACATGGATATTATGCTTAGTTATACTTGTGCCTCTTACTTCAATTAGAAGTCTTATGTTTGGTATAATACGTGAGAAGTGCAAATTTTTTGTTTTAAAAACAAAAGTTGAAATTCGTCTTGCAAAGGCTGAGCAAATACACTGGACGTCTCTTGAATTCTGCAAGGAGAATAGAATTACGCAGAGCATTAATGTCCCCGCCAGTGGATCTCAGAGGCCCTCTTACCCCTCCTCTAAGCCAATAAGAGATTGGGATAAGATTGAAGCTGAAGTGAAAAAGGAGGAGAAAGACGAAAAACTAGATGGGGATGCGGCGTTGAACAAGTTTTTCCGAGACATATACAAGGATGCTGATGAGGATACAAGAAGGGCCATGCAAAAATCATTTGTGGAATCGAACGGCACGGTCCTATCAACGAACTGGAAGGAGGTAGGATCAAAGAAGGTTGAAGGTAGCCCTCCAGATGGTATGGAGTTGAAGAAATGGGAGATCTGA 1707 40.07 MASDLEAKAKEAFIDDHFELSVDLYTQAIALSPKKSELYVDRAQANIKLGHYTGTALSPFNFMFLTLKWSLQLILFEILDDYIGLWFQYEEAVADANKAIELDPSNSKAYLRKGTACLKLEEYQTAKVALETGSALASGDSRFTNLIKECEKLIAGIGCLIIYQFKFVDEDDRSSFQSFCYLTSMTIIWKKHLHFFQFMDAPIFITEEMGDLTQESVENTVQENVLPTNDIVPASDQLHQATIEVKPKFRLLLFVGVNIFSLYFLPFFSFWSSSQLELDKCFWYFDYKVDGNLTIPSAKYSCRHEFYQKPEEVVVTIFAKGMPAENVIVEFGEQILSVTIDLPGEDAYHFQTRLFGKRQLRGSIYYPKQDGMFILHAYFSSFCCNGLVSLHFFSFLFEHLFPPATWILCLVILVPLTSIRSLMFGIIREKCKFFVLKTKVEIRLAKAEQIHWTSLEFCKENRITQSINVPASGSQRPSYPSSKPIRDWDKIEAEVKKEEKDEKLDGDAALNKFFRDIYKDADEDTRRAMQKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEI 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19727630 19731261 - Lsi05G011800.1 Lsi05g01180 663672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01180 568 PANTHER PROTEIN SGT1 HOMOLOG 297 357 IPR044563 GO:0051087
Lsi05g01180 568 PANTHER PROTEIN SGT1 HOMOLOG 424 568 IPR044563 GO:0051087
Lsi05g01180 568 Gene3D Tetratricopeptide repeat domain 1 61 IPR011990 GO:0005515
Lsi05g01180 568 Gene3D Tetratricopeptide repeat domain 84 156 IPR011990 GO:0005515
Lsi05g01180 568 SUPERFAMILY HSP20-like chaperones 423 546 IPR008978 -
Lsi05g01180 568 PANTHER PROTEIN SGT1 HOMOLOG 1 54 IPR044563 GO:0051087
Lsi05g01180 568 PANTHER PROTEIN SGT1 HOMOLOG A 88 157 - -
Lsi05g01180 568 Pfam SGS domain 486 566 IPR007699 -
Lsi05g01180 568 SUPERFAMILY TPR-like 6 152 IPR011990 GO:0005515
Lsi05g01180 568 Pfam CS domain 302 347 IPR007052 -
Lsi05g01180 568 Gene3D - 416 456 IPR008978 -
Lsi05g01180 568 Gene3D - 296 357 IPR008978 -
Lsi05g01180 568 CDD p23_CS_SGT1_like 305 456 - -
Lsi05g01180 568 PANTHER PROTEIN SGT1 HOMOLOG 88 157 IPR044563 GO:0051087
Lsi05g01180 568 ProSiteProfiles CS domain profile. 299 456 IPR007052 -
Lsi05g01180 568 PANTHER PROTEIN SGT1 HOMOLOG A 297 357 - -
Lsi05g01180 568 PANTHER PROTEIN SGT1 HOMOLOG A 1 54 - -
Lsi05g01180 568 PANTHER PROTEIN SGT1 HOMOLOG A 424 568 - -
Lsi05g01180 568 ProSiteProfiles SGS domain profile. 478 568 IPR007699 -
Lsi05g01180 568 SUPERFAMILY HSP20-like chaperones 299 357 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01180 K12795 SUGT1, SGT1; suppressor of G2 allele of SKP1 - csv:101208950 491.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01180 Lsi-Chr5:19727630 Lsi11g01649 Lsi-Chr11:24801333 6.22E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g790 . . Bda05g00098 Bda07g01908 Bpe03g00160 . Bma10g01265 Bma14g02037 Cmo16g00095 Cmo18g01311 . . . . Sed07g0976 . Cpe14g00075 Bhi01g01421 Tan01g0179 Cmetu06g2016 . Hepe07g0111 Mch10g0114 . . . . . . . . Cone1ag1200 Cone5ag0900 . . Lsi05g01180 . . . Blo07g00360 Blo09g00053 . . . . . . . . . Cma16g00091 Cma18g01280 . Car18g01194 Cpe09g00058 . . . . . . . . Cla05g00928 Cam05g1015 Cec05g1019 Cco05g1015 Clacu05g1004 Cmu05g0957 Cre05g1038 . Csa03g01760 Chy06g00988 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005199 2 1 2 2 3 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 2 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01180 Lsi_Chr05 FPKM 253.325363 277.791412 225.591507 227.044357 95.96666 92.061279 91.75209 127.222267 126.005135 128.359055