Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01181 ATGTTATGTAGAACAGTCCCCAAATTTCTCAATAGAAATGAACTCTATCGTCTGGAAGAAAGCTGCTCTCAGCTTATTTCAATCTGCAATTCCAAATCCTTAAAAGAGGGTGTCTGTGTTCATAGCCCGATTATCAAGCTCGGTCTTCATGGTCATTTGTATCTAAGCAATAATTTGCTATCTCTTTATGCTAAACGATTTGGACTCAAACAAGCACGTAACTTGTTTGATGAAATGCCTGACAGAGATGTGGTGTCCTGGACTGCAATGCAGGCTGCTTATGTCAGGAACAGAAGCTACAATGAGGCTTTTGAATTGTTTGGCTTAATGCTAACATTGGGTCATTGTCCAAATGAGTTCACGCTTTCGAATTTGATCCGATCATGCTCCGAAACTGGAGAACTGGAGCTTGGAAGTTGTGTCCATGGCTATGTCATAAAGAATGGCTTTGAGTCGAAGCCAGTTCTGGGATGCACCTTAATTGATCTTTATGCAAAGTGTGATTGCTCTGAGGAAGCTTATGATGTTTTCAGAAATATGGACGACGTTGATACCATTACTTGGACAGTGATGATTTCTTCATTAGTGCAAGCACAGAAATGGGATGAAGCTCTTCAGTTATATATCACTATGATGGATTCTGGGGTTACTCCTAATGAGTTCACTTTTACCAAACTTTTAGCCACAACCAATTTTCTGGGTTCGAAATATGGGAAGTTACTCCATAGTCACATGATAACATTGGGAGTCAATCTGAACGTAGTTCTAAAGACGGCGCTTGTCGATATGTATTCAAGAAACCAAGAGTTAGAAGATGCAATGAAGGTGGCAAATCAAACACCTGAGAAAGACGTGTTTTTGTGGACCTCTATTATCTCCTGCTTCAATCAAAATTTGAAGGTCAAGGAGGCTATTGCTGCATTTCAAGAGATGAGAATGTCTGGAATTTTACCAAACAGTTTCACATATTCCAGTGTGTTAAGTGCCTGCACATCGATCCCATCACTTAAATTAGGTAAGCAAATCCACTTGCAGGTAATATTAGCTGGGTTGGAGGCTGATGTTTGTGCTGGGAGTGCACTAATTAATATGTACATGAAATGTTCTAACTTCATAGATGATGCCTTGAGAGTGTTTAGGACAATAACTTCACCAAGTGTTATTTGTTGGACTTCTTTAATATCTGGTCTTGCCGAGCATGGTTGTGAACAAGATTGTTATAGATATTTTTTGGATATGCAAGCAGCAGGAGTGCAGCCAAATTCTTTCACTCTTTCTAGCATCCTTGGGGCCAGCAGTTCAGCAAAATCACACAATCAAACATCGATGTTCCATGGATATATGCTAAAAATGAGGGCTCACAATGATATCGTTGTTGGAAATGCTCTTGTGGATGCTTATGCTCGATCTGGAAAGGTGGATGACGCTTGCCGAGTGATTAGCACAATGAACCATCGAGATGCCATCACATATACTAGCTTAGCCGCGAGACTGAATCAGATGGGTGAGCATGAACTGGCACTAAAAATCATCGATTCCATGCGTGTTGATAATGTTGAGATGGATGAAATTAGCTTGACAAGCTTGGTATCAGCATTGACAGGCCTTGGCATAATTGAAACTGGGAAACAACTTCATTGCTATTCTTTGAAGTATGGCTTAGACAACACCCGCTCAATAAAAAATAGTCTGATGGACTTATATGGTAAGGTTGGATGCTTGAAGGATGCCAGTAAAGCTTTTGAAGAAATAATCGAACCAGACGTTGTTTCTTGGAACAATATGATATCTATATTAGCACTCAACAGGCATATCTCCTCTGCTCTCTCTACCTTCGATAATATGAGATTAGCTGGCCTAGAGCCCGATTCGATCACGTTCCTATCAATACTTTCAGCTTGCAGTCAAGGTGGTTTGGTTGATTTTGGAATGCACTACTTTCATTCTATGAAAGCAACACATAATATAGAGCCAGAATTGGATCATTATGTTTGTATAGTTGATCTCCTAGGCCGCGTTGGACAACTAGAGAAGGCAATGGAATTTGTCGAATCCATGCCATTTGAGGCAGATGCTAAAATATACAAGACATTATTGAAAGCCTGCAAATTACATGGGAACATGCAGCTTGGAGAAGATGTGGCAAGAAGAGGTCTTCAACTTAACCCATACGATTCATCTTTCTATTTGATGCTGGCCAACTTGTACGATGGATACAACCGGCACGATTTATGTGCGGAAACTCGTAAGCTAATGCGAGATCGTGGAGTGAGGAAGAGTCCTAGCCAGAGTTGGTTAGAATTACATAGTAAGATTCATCTCTTCGTCACAGGAGATGGATTACACCCTCAGATCAATGACATCCAAGAAAAGTTAGAATTCCTCAGAGCTGAGTTCAAGAGAAGGGGGCTTTCATATCATGAAGATGAAAATTCATCACATCATAGTGAAAAATTGGCTCTTGCATTTGGTCTCATTAATATGCCACCCACAGCTGTTGTACGAATAATGAAGAACATAAGCATTTGCAGAGAATGTCATGACTTCATATTGCTAGTAACAAAGGTGGTGGAGAGGGAAATAATTGTGAGAGATGGGAGCAGGCTCCATGTGTTCAAAAATGGAAGCTGCTCTTGCAGCCATTACTCATGA 2652 40.46 MLCRTVPKFLNRNELYRLEESCSQLISICNSKSLKEGVCVHSPIIKLGLHGHLYLSNNLLSLYAKRFGLKQARNLFDEMPDRDVVSWTAMQAAYVRNRSYNEAFELFGLMLTLGHCPNEFTLSNLIRSCSETGELELGSCVHGYVIKNGFESKPVLGCTLIDLYAKCDCSEEAYDVFRNMDDVDTITWTVMISSLVQAQKWDEALQLYITMMDSGVTPNEFTFTKLLATTNFLGSKYGKLLHSHMITLGVNLNVVLKTALVDMYSRNQELEDAMKVANQTPEKDVFLWTSIISCFNQNLKVKEAIAAFQEMRMSGILPNSFTYSSVLSACTSIPSLKLGKQIHLQVILAGLEADVCAGSALINMYMKCSNFIDDALRVFRTITSPSVICWTSLISGLAEHGCEQDCYRYFLDMQAAGVQPNSFTLSSILGASSSAKSHNQTSMFHGYMLKMRAHNDIVVGNALVDAYARSGKVDDACRVISTMNHRDAITYTSLAARLNQMGEHELALKIIDSMRVDNVEMDEISLTSLVSALTGLGIIETGKQLHCYSLKYGLDNTRSIKNSLMDLYGKVGCLKDASKAFEEIIEPDVVSWNNMISILALNRHISSALSTFDNMRLAGLEPDSITFLSILSACSQGGLVDFGMHYFHSMKATHNIEPELDHYVCIVDLLGRVGQLEKAMEFVESMPFEADAKIYKTLLKACKLHGNMQLGEDVARRGLQLNPYDSSFYLMLANLYDGYNRHDLCAETRKLMRDRGVRKSPSQSWLELHSKIHLFVTGDGLHPQINDIQEKLEFLRAEFKRRGLSYHEDENSSHHSEKLALAFGLINMPPTAVVRIMKNISICRECHDFILLVTKVVEREIIVRDGSRLHVFKNGSCSCSHYS 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19735520 19738171 + Lsi05G011810.1 Lsi05g01181 663673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01181 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 184 218 IPR002885 -
Lsi05g01181 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 83 117 IPR002885 -
Lsi05g01181 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Lsi05g01181 883 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 20 433 - -
Lsi05g01181 883 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 436 803 - -
Lsi05g01181 883 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 117 545 - -
Lsi05g01181 883 Pfam PPR repeat family 283 330 IPR002885 -
Lsi05g01181 883 Pfam PPR repeat family 184 227 IPR002885 -
Lsi05g01181 883 Pfam PPR repeat family 587 634 IPR002885 -
Lsi05g01181 883 Pfam PPR repeat family 82 129 IPR002885 -
Lsi05g01181 883 Pfam E motif 705 767 IPR046848 -
Lsi05g01181 883 Pfam DYW family of nucleic acid deaminases 813 882 IPR032867 GO:0008270
Lsi05g01181 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Lsi05g01181 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Lsi05g01181 883 Gene3D Tetratricopeptide repeat domain 541 777 IPR011990 GO:0005515
Lsi05g01181 883 Gene3D Tetratricopeptide repeat domain 12 141 IPR011990 GO:0005515
Lsi05g01181 883 TIGRFAM PPR: pentatricopeptide repeat domain 287 319 IPR002885 -
Lsi05g01181 883 TIGRFAM PPR: pentatricopeptide repeat domain 388 421 IPR002885 -
Lsi05g01181 883 TIGRFAM PPR: pentatricopeptide repeat domain 590 624 IPR002885 -
Lsi05g01181 883 TIGRFAM PPR: pentatricopeptide repeat domain 85 119 IPR002885 -
Lsi05g01181 883 TIGRFAM PPR: pentatricopeptide repeat domain 186 220 IPR002885 -
Lsi05g01181 883 Pfam PPR repeat 663 686 IPR002885 -
Lsi05g01181 883 Pfam PPR repeat 562 586 IPR002885 -
Lsi05g01181 883 Pfam PPR repeat 159 180 IPR002885 -
Lsi05g01181 883 Pfam PPR repeat 461 483 IPR002885 -
Lsi05g01181 883 Pfam PPR repeat 489 518 IPR002885 -
Lsi05g01181 883 Pfam PPR repeat 389 418 IPR002885 -
Lsi05g01181 883 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Lsi05g01181 883 Gene3D Tetratricopeptide repeat domain 142 230 IPR011990 GO:0005515
Lsi05g01181 883 Gene3D Tetratricopeptide repeat domain 231 336 IPR011990 GO:0005515
Lsi05g01181 883 Gene3D Tetratricopeptide repeat domain 337 442 IPR011990 GO:0005515
Lsi05g01181 883 Gene3D Tetratricopeptide repeat domain 443 540 IPR011990 GO:0005515
Lsi05g01181 883 PANTHER BNAC02G09320D PROTEIN 20 433 - -
Lsi05g01181 883 PANTHER BNAC02G09320D PROTEIN 436 803 - -
Lsi05g01181 883 PANTHER BNAC02G09320D PROTEIN 117 545 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01181 - - - mcha:111011682 1501.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01181 Lsi-Chr5:19735520 Lsi05g01250 Lsi-Chr5:20296971 3.70E-69 dispersed
Lsi05g01181 Lsi-Chr5:19735520 Lsi05g01931 Lsi-Chr5:26484302 3.75E-159 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g789 . . . . . . . . . Cmo18g01310 . . . . . . . Bhi01g01420 . . . . Mch10g0115 . . . . . . . . . Cone5ag0899 . . Lsi05g01181 . . . . . . . . . . . . . . . Cma18g01279 . Car18g01193 . . . . . . . . . Cla05g00927 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014302 0 1 0 0 0 1 1 1 1 0 1 1 1 0 1 1 1 0 0 1 0 0 0 0 0 1 1 0 0 1 15
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01181 Lsi_Chr05 FPKM 15.622233 17.241426 13.746251 15.727988 15.46718 14.568627 15.211954 20.968218 18.616709 19.048143