Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01183 ATGGCAACTTCGGAAGAGAATAGTGCATTGTTCCCCATTTTTATTTTGACAATAATTGCACTGCCTTTAGTGCCTTATACAATTCTTAAGCTTTGTCGTGCTGCTTCGAAGAAGACAAAGATTATACATTGCCAGTGTTCTGAATGCTCCCGTTCAGGGAAGTACCGTAAGTCAATATTTAAGCGAATAGCGAATTTCTCGACGTATAGCAACTTGACACTAGTACTTCTTTGGATCTTCATGTTCGTGTTGGTCTATTACATTAAAAATATTAGCCGGGAGGTAAATTATATTGAAGTCTTTGAGCCATTTAGTATTCTGGGATTGGAAACTGGGGCTTCAGAGGCAGACATAAAGAAGGCATACAGGAGACTTTCTATCCTATACCATCCAGATAAAAATCCAGATCCAGAGGCCCATAAATATTTCGTGGAGTTCATATCTAAGGCTTATCAAGCTTTGACAGATCCAATATCCCGTGAGAATTATGAAAAATATGGCCATCCAGATGGCAAGCAGGGATTTCAAATGGGAATTGCACTCCCTCAATTCTTATTAAATATTGATGGGGCATCTGGTGGGATACTTTTACTGTGGATTGTTGGAGTTTGTATTATCTTGCCCTTGGCAATAGCCGTTATATATCTTTCAAGGTCGTCAAAATACACTGGAAATTATGTCATGCGTCAAACACTTTCCACATATTATTACTTCATGAAGCCTTCTTTGGCACCAAGGTATCTTTACAAAGTAATGGATGTCTTCATAAAGGCAGCTGAGTATGTGGAAATGCCAGTTCGTAGAACTGATAATGACCCTCTTCAAAAGATATTTGGACTAGTTAGGAGTGAGTTGAATCTTGACCTTAAGAACATTAAACAAGAGCAGGCGAAGTTTTGGAAGCAACATCCAGCCCTTGTTAAAACACAATTGTTGATCCAAGCTCAATTAACTCGTGAATTTGCCAACTTGCCTCCACCTTTGAATGCTGACTTTAAACATGTGCTGGAACTTGCTCCTCGCCTTCTTGAAGAATTAATGAAGATGGCACTGATCCCACGTAATGTCCAAGGACAAGGATGGCTACATCCTGCAACCGGGGTCATTGAGCTCACACAATGTGTCATTCAGAAGTACTGCAGTAATGGTGCAGAACCCATGTATCTTGTCTGTCAAGCTGTTCCTCTCAGTACAAGAAAGGCCACTGGAGGATCCTCTGAAGGTATTGCACCATTTCTACAGTTGCCACATTTTAGCGAGGCTGTTGTCAAGAAGATAGCACGCAAGAAAGTGAGAGCGTTTGAGGATCTTCAGAAACTGTCTCAAGAAGAGCGTGCTGAGCTGCTTGCTCAGGTCGGTGGGTTCTCACCTGCTGAAGTACAAGATGTTGAAACGGTGTTGGAAATGATGCCATCTGTTACAGTTGCTATCTCATGTGAAACAGAAGGTGAAGAAGGTATCCAAGAGAGTGATACTGTCACCATTCAGGCTTGGGTGACACTCGAACGCCGAAACGGGCTCGTGGGTGCTCTCCCGCATGCCCCCTACTACCCATTTCACAAAGAAGAGAGCTTCTGGTTCTTGCTTGCAGATCCGAATTCAAACAATGTGTGGTTTTACCAGAAGGTCAGTTTCATGGATGAAGCTACGGCCATAACTGCTGCTTCCAAGGCGATTGAGGAACAAATGGAGGGATCTGGAGCAAGTGTGAAGGAAACCAGTGCTGCAGTTAGGGAAGCGGTGGAGAAGGTAAAAGCAGGATCTAGACTGGTTCTAGGCAAGTTCCACGCCCCAGCTGAGGGGAACTACAATTTAACTTGTTACTGCCTGTGTGATTCTTGGATTGGTTGTGATAACAAAACAAACTTGAAATTGAAAATCTTGAAACGAACCCGTGCGGGTACCCGTGGTGGCCTTATGGCAGAAGAAGGGCCAACCATGGAAGATGGAGTTGAAGAGGAAGAGGAAAATGATGAAGAAGAATATGATGATTACGAGAGTGAGTACAGTGAAGATGAAGCTGATGAACAAGATGTGAAAAAGAAGGGCCATGTTGCCAATGGAAAAGCTCATAAGCAGAGTTCAAGTTCAGAAGGCTCTGGCTCTGATGATGAATGA 2118 43.01 MATSEENSALFPIFILTIIALPLVPYTILKLCRAASKKTKIIHCQCSECSRSGKYRKSIFKRIANFSTYSNLTLVLLWIFMFVLVYYIKNISREVNYIEVFEPFSILGLETGASEADIKKAYRRLSILYHPDKNPDPEAHKYFVEFISKAYQALTDPISRENYEKYGHPDGKQGFQMGIALPQFLLNIDGASGGILLLWIVGVCIILPLAIAVIYLSRSSKYTGNYVMRQTLSTYYYFMKPSLAPRYLYKVMDVFIKAAEYVEMPVRRTDNDPLQKIFGLVRSELNLDLKNIKQEQAKFWKQHPALVKTQLLIQAQLTREFANLPPPLNADFKHVLELAPRLLEELMKMALIPRNVQGQGWLHPATGVIELTQCVIQKYCSNGAEPMYLVCQAVPLSTRKATGGSSEGIAPFLQLPHFSEAVVKKIARKKVRAFEDLQKLSQEERAELLAQVGGFSPAEVQDVETVLEMMPSVTVAISCETEGEEGIQESDTVTIQAWVTLERRNGLVGALPHAPYYPFHKEESFWFLLADPNSNNVWFYQKVSFMDEATAITAASKAIEEQMEGSGASVKETSAAVREAVEKVKAGSRLVLGKFHAPAEGNYNLTCYCLCDSWIGCDNKTNLKLKILKRTRAGTRGGLMAEEGPTMEDGVEEEEENDEEEYDDYESEYSEDEADEQDVKKKGHVANGKAHKQSSSSEGSGSDDE 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19746386 19752098 + Lsi05G011830.1 Lsi05g01183 663675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01183 705 Coils Coil 423 443 - -
Lsi05g01183 705 SUPERFAMILY E set domains 475 629 IPR014756 -
Lsi05g01183 705 Gene3D - 221 380 - -
Lsi05g01183 705 CDD DnaJ 102 156 IPR001623 -
Lsi05g01183 705 MobiDBLite consensus disorder prediction 646 673 - -
Lsi05g01183 705 PANTHER DNAJ PROTEIN ERDJ2-LIKE 1 696 - -
Lsi05g01183 705 Gene3D - 410 469 - -
Lsi05g01183 705 ProSiteProfiles dnaJ domain profile. 102 167 IPR001623 -
Lsi05g01183 705 PRINTS DnaJ domain signature 159 178 IPR001623 -
Lsi05g01183 705 PRINTS DnaJ domain signature 104 122 IPR001623 -
Lsi05g01183 705 PRINTS DnaJ domain signature 139 159 IPR001623 -
Lsi05g01183 705 PRINTS DnaJ domain signature 122 137 IPR001623 -
Lsi05g01183 705 Gene3D C2 domain 472 634 IPR035892 -
Lsi05g01183 705 SUPERFAMILY Sec63 N-terminal domain-like 249 471 - -
Lsi05g01183 705 Pfam DnaJ domain 103 164 IPR001623 -
Lsi05g01183 705 SUPERFAMILY Chaperone J-domain 96 194 IPR036869 -
Lsi05g01183 705 Gene3D DnaJ domain 102 185 IPR036869 -
Lsi05g01183 705 Pfam Sec63 Brl domain 226 623 IPR004179 -
Lsi05g01183 705 Coils Coil 648 682 - -
Lsi05g01183 705 MobiDBLite consensus disorder prediction 636 705 - -
Lsi05g01183 705 PANTHER SEC63 DOMAIN-CONTAINING 1 696 - -
Lsi05g01183 705 SMART dnaj_3 101 159 IPR001623 -
Lsi05g01183 705 SMART Sec63_2 212 625 IPR004179 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01183 K09540 SEC63, DNAJC23; translocation protein SEC63 - csv:101209193 1222.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01183 Lsi-Chr5:19746386 Lsi11g01678 Lsi-Chr11:25005146 0 dispersed
Lsi05g01183 Lsi-Chr5:19746386 Lsi10g00078 Lsi-Chr10:1318094 1.38E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g785 . . . Bda07g01902 Bpe03g00158 . . Bma14g02040 Cmo16g00097 Cmo18g01308 . . . . . . Cpe14g00076 . . . . . . . . . . . . . . . . Cone14ag0052 Cone15ag0058 Lsi05g01183 . . Cme06g01046 . Blo09g00057 . . . . . . . . . Cma16g00092 Cma18g01277 Car16g00082 Car18g01191 Cpe09g00060 . . . . . . . . Cla05g00924 Cam05g1012 Cec05g1016 Cco05g1012 Clacu05g1001 Cmu05g0954 Cre05g1035 . Csa03g01758 Chy06g00986 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005404 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 2 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01183 Lsi_Chr05 FPKM 8.328258 8.196566 33.83432 30.374281 104.039658 94.176674 111.607109 36.594852 33.909988 32.260834