Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01184 ATGAGTCCCAAGCATCGCTTTCGTCCTCCTCGGCTTCCTACCGCGATTTCGTGCTTCTGCCTGGTTCTTCCTCCTAAGCTCTTAGAGTTGAAAATTTGGATTTCAATTTATCGAAATCTATTGATATTTGTTTTCATTTGCTGGCTCAGGATGCTTACTTTGATTTACTCTTTTCCAGTCATATCCAAAAGGATAGAATCTGTTAAATTTTCCTGGTGTGCAAGCAGTTCAGTTGTATGCGCTGCAAAGGGTCCACGGCCGAGATATCCTCGGGTCTGGAAAACCAAAAAGAGAATTGGGACGATATCCAAGGCAGCAAAGCTTGTTGATTGTGTCAAGGGACTGTCTAACGTCAAAGAGGAAGTCTATGGAGCTCTTGATTCCTTCATTGCATGGGAACTAGAGTTTCCTCTTATTACTGTAAAGAAAGCCTTGAAGACCTTAGAGAACCAAAGAGAATGGAAGAGGATAATTCAGTTGACGAAATGGATGTTAAGTAAAGGCCAAGGAAGAACAATGGGAAGCTATTTCACGTTATTAAATGCCTTAGCTGAAGATGGAAGACTTGATGAAGCAGAAGAGCTTTGGAACAAATTGTTTTATCAGCATTTGGAGAGCATGCCTCGCATATTCTTTCATAAAATGATATCCCTGTACTACGATCGGGCAATGCACGACAAGTTATTTGAGTTTCAACTGCATCAGTCACAAAGCTCTAACCATTCCTTCCCCTCCAAATTGATTAAAAAAAGTGTTAAAAACTTAAAAAGTTATGAAGGCTATGATACATGGTGCAGCAGATATATTTTAGGCAATAAATCTCTAAGCATTGCTCCAAGTTATTCTTCAGACTCACGATTGAAAAAGGAAAAAGAAGAGATTAAAGTTAAAGCTTACAACTTTCTTGTATTTGCTGATATGGAGGAACTTGGAGTTCAACCAAATATGGCAATTGTCACCATGGTTGGAAATGTCTTCCATGAGTTGGGTATGTTCGATAAATATGAAAAGCTGATGAAGAAATATCCCCCACCAAAATGGGAATATCGTTACGTCAAAGGAAAGCGCGTAAGAATACGATCAAAGTATCTGTATGAAAATGGTAATTCCAACAATGGTTTAAGTGAGCATGACAAATTGGAACATAGTTCAACGAAGCTGTTGGAGGAAGCTGAAATAACTTCCGAGGATTCCAGTCTTGAAGATGATGAGGAAATGAGCGAAGATCCAGTTGGAATTCTGGAAGATGAATGTATTTCAAAAGAATCCAATTTTGAGCATGATTTCATGGGGTTTGGGCAATTGTAA 1308 38.91 MSPKHRFRPPRLPTAISCFCLVLPPKLLELKIWISIYRNLLIFVFICWLRMLTLIYSFPVISKRIESVKFSWCASSSVVCAAKGPRPRYPRVWKTKKRIGTISKAAKLVDCVKGLSNVKEEVYGALDSFIAWELEFPLITVKKALKTLENQREWKRIIQLTKWMLSKGQGRTMGSYFTLLNALAEDGRLDEAEELWNKLFYQHLESMPRIFFHKMISLYYDRAMHDKLFEFQLHQSQSSNHSFPSKLIKKSVKNLKSYEGYDTWCSRYILGNKSLSIAPSYSSDSRLKKEKEEIKVKAYNFLVFADMEELGVQPNMAIVTMVGNVFHELGMFDKYEKLMKKYPPPKWEYRYVKGKRVRIRSKYLYENGNSNNGLSEHDKLEHSSTKLLEEAEITSEDSSLEDDEEMSEDPVGILEDECISKESNFEHDFMGFGQL 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19754060 19757384 - Lsi05G011840.1 Lsi05g01184 663676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01184 435 Gene3D Tetratricopeptide repeat domain 103 239 IPR011990 GO:0005515
Lsi05g01184 435 MobiDBLite consensus disorder prediction 394 410 - -
Lsi05g01184 435 PANTHER OS01G0757700 PROTEIN 52 230 - -
Lsi05g01184 435 PANTHER OS01G0757700 PROTEIN 301 407 - -
Lsi05g01184 435 MobiDBLite consensus disorder prediction 391 410 - -
Lsi05g01184 435 PANTHER OS01G0757700 PROTEIN 52 230 IPR044646 -
Lsi05g01184 435 PANTHER OS01G0757700 PROTEIN 301 407 IPR044646 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01184 - - - csv:101209439 345.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00928 Lsi-Chr4:9564756 Lsi05g01184 Lsi-Chr5:19754060 1.88E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g784 . . Bda05g00096 . Bpe03g00260 . Bma10g01260 . . Cmo18g01307 . . . . Sed07g2526 . . Bhi01g01417 Tan01g0183 Cmetu10g1018 . Hepe07g0115 Mch10g0118 . . . . . . . . . . Cone14ag0053 . Lsi05g01184 . . Cme06g01045 Blo07g00369 . . . . . . . . . . . Cma18g01276 . Car18g01190 Cpe09g00061 . . . . . . . . Cla05g00923 Cam05g1011 Cec05g1015 Cco05g1011 Clacu05g1000 Cmu05g0953 Cre05g1034 . Csa03g01757 Chy06g00985 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010882 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01184 Lsi_Chr05 FPKM 102.637024 98.844345 69.723534 65.111893 119.721054 123.584068 115.243423 77.895271 83.001167 77.284225