Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01185 ATGATCGAAACTGCTCTGGCCGTTCGATTCCCCGCCGGCGCAAACTTCTGCTACTCCTCCGCCTTGTCCTATCACCGTCCAGCTTGGACTTCGGAGGATGTAACTAGTATAGGCCATGCTAGCAGCTTTGGCCGGCTTTTGCATTCTTGCACTTACGACGTGCATTGGAAAAGATGCCAAAGGCTTAATAGTAGGTCTCTCCTGGGAAGGAACAATCTCAGAAAGAATGGAATCCAAGCATCAGCAGAGCATTTGGGCTCTGCATCAGATCCAATTAAACAAAATAGGGGATTGCAGTATCATCCATCTGAGGAGCTTGTGAAATCAATAACAGAGATTGCTGAGGATGTTAGACCTACCTCTGCAGAAACTACGAGAACAATCATTGAGGTAAATAGCAAAGCAACATTAATGTTTGCGGGTTTGATTAACGATGAAGTTCAAGAAAATATTATCTGGCCAGAACTACCTTATGTAACTGACGAATATGGAAATATCTATTTTCAAATGAAGAATACTGAAGAGGCCATGCAAAACCTAACTTCAGAGAATAACTTTGTGCAAGTTCTTATTGGCCTTGATACCATGGAAATGATCAATGAGATGGAGTTGTTTGGTCCATCAGAAATTGATTTTGGATTTGAAGAGCTTGATGATGAGGCTACGAATGATGGAGATGATGGTGATGGTGATGGTGATGGTGATGATGAAGATGAAGATGAAGATGACGATGAGGATGATGATGATGTAGATGATGAATACAATAGGGACTGGGTTTCTGTCATAGACGATGAAGATGATCAAAATCACTCTGATGAGACCTTGGGAGATTGGGCAAAACTGGAGACAATGCGTTCTTCACATCCAATGCATTTTGCCAACAAGCTTTCAGAGGCTGCATCGGATGATCCAATTGATTGGATGGAACAGCCCCCAGCAACTTTAGTGATTCAAGGTGTTCTAAGACCTGCATTCAGTGAAGAGCATACTGTTATCCAAAAGCATCTATCCAGCCGCCATTCGAGTAATGTTGACAAAAACGAGGCTCAGAAACTTGAAGATAGCCTTGAAAATAATGGTAGGATCAATCATCATGGTCATGAATCAAGCTCATCCAAAGATGGTTTAAACTTGACGGATGCATTGGATGAAAATATTCCAGCGAGCGAGGCTTCATTTTACCGGCTGGAGATGATAAAAGTTCAGCTATTTACAGGACATGCACATCCAAGCAACGTTGAAATAGAAGATCTCATGAAAGCTCAACCTGATGCAATTGCGCACTCAGCCGAAAAAATTATTTCTCGTTTAAGAGCAGGTGGAGAAAAGACCGCACAAGCGCTCAAGTCTCTCTGTTGGAGATGCAAGGGCATTCAGGTCGAGGAGGCAGTAATCAATGGTATCGATTCACTTGGATTTGATGTGAGGGTTTGCTCTGGAACTCAGGTCCAAACATTGCGGTTTTCGTTTGATACACGGGTTCCAATCTTTGATGTTTCTAAGCAGAATGGAAATAGAAAAATCCAGATGGAGAAAACAGGATTAAAGAGGAAGGCACCTGGTGCTGTTATGAAAGAACCTTGA 1584 42.42 MIETALAVRFPAGANFCYSSALSYHRPAWTSEDVTSIGHASSFGRLLHSCTYDVHWKRCQRLNSRSLLGRNNLRKNGIQASAEHLGSASDPIKQNRGLQYHPSEELVKSITEIAEDVRPTSAETTRTIIEVNSKATLMFAGLINDEVQENIIWPELPYVTDEYGNIYFQMKNTEEAMQNLTSENNFVQVLIGLDTMEMINEMELFGPSEIDFGFEELDDEATNDGDDGDGDGDGDDEDEDEDDDEDDDDVDDEYNRDWVSVIDDEDDQNHSDETLGDWAKLETMRSSHPMHFANKLSEAASDDPIDWMEQPPATLVIQGVLRPAFSEEHTVIQKHLSSRHSSNVDKNEAQKLEDSLENNGRINHHGHESSSSKDGLNLTDALDENIPASEASFYRLEMIKVQLFTGHAHPSNVEIEDLMKAQPDAIAHSAEKIISRLRAGGEKTAQALKSLCWRCKGIQVEEAVINGIDSLGFDVRVCSGTQVQTLRFSFDTRVPIFDVSKQNGNRKIQMEKTGLKRKAPGAVMKEP 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19759017 19772232 + Lsi05G011850.1 Lsi05g01185 663677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01185 527 Gene3D - 422 511 IPR037119 -
Lsi05g01185 527 PANTHER CREG1 PROTEIN 2 493 - -
Lsi05g01185 527 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 2 493 - -
Lsi05g01185 527 Coils Coil 170 190 - -
Lsi05g01185 527 MobiDBLite consensus disorder prediction 218 254 - -
Lsi05g01185 527 MobiDBLite consensus disorder prediction 359 378 - -
Lsi05g01185 527 SUPERFAMILY FMN-binding split barrel 310 494 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01185 - - - cmo:103484131 851.662
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01185 Lsi-Chr5:19759017 Lsi07g00076 Lsi-Chr7:755429 4.31E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g783 . . . . . . Bma10g01259 . Cmo16g00099 Cmo18g01306 . . . . Sed13g0111 . Cpe14g00078 Bhi01g01416 Tan01g0184 Cmetu06g0411 . Hepe07g0116 Mch10g0119 . . . . . . . . Cone1ag1197 Cone5ag0895 . . Lsi05g01185 . . . Blo07g00370 . . . . . . . . . . Cma16g00093 Cma18g01275 Car16g00083 Car18g01188 Cpe09g00062 . . . . . . . . Cla05g00922 Cam05g1010 Cec05g1014 Cco05g1010 Clacu05g0998 Cmu05g0952 Cre05g1033 . Csa03g01755 Chy06g00984 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008655 0 1 1 1 0 1 2 1 1 1 1 1 2 1 3 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01185 Lsi_Chr05 FPKM 6.417027 6.226713 7.363123 8.239653 7.016419 7.006902 6.74064 5.51124 5.654984 5.919852