Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01187 ATGGCCTCGACCGTGAAGGACGACGTCGATCGATTGTTTGAATGCTTCAAGTGCGGCGTTTCTCCTCCTCCAATGACAATCATTGCACTAACACTACTAGATTTCGTAAACTGGAATTACGATAGAGGAGTAATGTATGTTATAGAATCTGCTGTGAGAGGAAAAAAGAAAAGAAAAAGTATATTGAAGCCCGAGTGTTCAGTAAACTCTGAGACTTCAGCTTCTGGATCGGTTAAAGAAAGGCAGGAAAGTGCATCGAGCGTCCAAGATACCGTGGAGAAAATTGGTTTGACAAGTACAGAAAAAGGTTCTAGTTCTAAGAAGTTCTCTCCAATCGTATTTTATGGTTCGCCTAGAGGCGTCCCTCCTAAGAGGCCATCTAGTTTGTGGAGATTATTGCGTGAAATCCGTGTCGATCTTTCTGAGCAAAGCAAATTCAACTTAAGCAAGCAAGTGTGGGCCACATTTCCCAGACAAGAAGAAGCAATTAAGTTTGCGAGAGAGCACACTGATGTTCATATTTTTAGTTATCAAGATCATTTTAACGGACAAAGGAGATTTCTAGTTTCAACTTACAGTGAGTTCTGGCATAGGTACAAAAGCATGGATTCAAGATGTCGCCACCATTATGAAGTGATTCAAGAGGGTGCTCCGTGTCACCTTTACTTTGATTTGGAATACAGTAAAAGAATCAATACGGGAAAAAATGGAGACGTAATGGTTGATTCCTTGATATCAGTTATTCTAGAAGCCTTCAATGAAAAGTATTCAATTCAAGGAAGCTTTGACTGGGTACTAGAGCTTGATTCCTCAAACGAAGAGAAGTTCTCTCGCCACCTGATAATCCGCATACCAAAAGTTGCTTTTAAGGATAACTCGCATGCAGGAGCATTTGTTGGTGAGATATGTTCACGGATTTGTAGTGCAAAAGTGGAAGGGAGATACGAAGAATTATTTATCAAAAAAGATTCAAGCTCCACTGAATCTCCTAGCCATTTGTTTGTGGACAATGCAGTTTATTCTAGAAATCGTTGCTTTCGTTTAGCTTTGTCATCGAAAGCAGGGAAGACTTCTGTGCTTCTACCTACAGGGAGACATGCTCGTACAAAAATGTGTGAGGAAGACATGTTCATGACATCCTTGATCTGCAACGTTGATGCTGACTGCGAGAAGTTTCTGGTTTGCAAAATGGATATAGACTGCGTAAAGACATTGCAATTTGAGATGGAGGAGAAATGTAATTTTGGACGGCATTTCAGTTTCGCCCAAGAAGCACCGTTGACTGGCTGCATGAGAGATGTTTCAGCAACTTCTTGCATGGGAAGATCTCCATTCCCAGCTGTGGATAAGTTTGTTGAATCTGTTGCCTCCAGTGGAAGTGTGGCAGTCATTAACGTAGCTGCTGCCTTCCCAGGAAAAATACGCTGCTGGTACTGGTTCTCAGAATATGGACTAATAGTCTACAGCATGTCCCGTAATAGATACTGTGAACGAATTGGTCGAGAACACAAAAGCAACCATGTGATGTATGTTGTCGACCTTAGGAGGGCTGCCTATTATCAGAAGTGTCACGATCCAGATTGTAGAGGTTATCGATCTCCTCTACGTCCAATCCCAATTGATGTCATTCCTAGTCCATGGGTTTCCACGGATTCAGAACAGACATCAAATGACACAGTGTCAACCGATGGTTGCATCAAGTATCAATCTCTAAGCAACGACGAAAATTGTCTTTTGCTTTTCAGTGACAAGAAGATTACAGACAGCAGTGCCAAAGATTCCTGGTGGCTTGAAGTGATGAGAGTGGCAGACGATGTTGAAAACAAACGGAACATGGTTGATCCCCAAAGACACTATTTAATTCACCTTACTCGTGCACTTTTTTCTACATTGATTCTATATGATCTATCTCTTTTCCATGTGAAAGATTAG 1932 41.51 MASTVKDDVDRLFECFKCGVSPPPMTIIALTLLDFVNWNYDRGVMYVIESAVRGKKKRKSILKPECSVNSETSASGSVKERQESASSVQDTVEKIGLTSTEKGSSSKKFSPIVFYGSPRGVPPKRPSSLWRLLREIRVDLSEQSKFNLSKQVWATFPRQEEAIKFAREHTDVHIFSYQDHFNGQRRFLVSTYSEFWHRYKSMDSRCRHHYEVIQEGAPCHLYFDLEYSKRINTGKNGDVMVDSLISVILEAFNEKYSIQGSFDWVLELDSSNEEKFSRHLIIRIPKVAFKDNSHAGAFVGEICSRICSAKVEGRYEELFIKKDSSSTESPSHLFVDNAVYSRNRCFRLALSSKAGKTSVLLPTGRHARTKMCEEDMFMTSLICNVDADCEKFLVCKMDIDCVKTLQFEMEEKCNFGRHFSFAQEAPLTGCMRDVSATSCMGRSPFPAVDKFVESVASSGSVAVINVAAAFPGKIRCWYWFSEYGLIVYSMSRNRYCERIGREHKSNHVMYVVDLRRAAYYQKCHDPDCRGYRSPLRPIPIDVIPSPWVSTDSEQTSNDTVSTDGCIKYQSLSNDENCLLLFSDKKITDSSAKDSWWLEVMRVADDVENKRNMVDPQRHYLIHLTRALFSTLILYDLSLFHVKD 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19775602 19782274 - Lsi05G011870.1 Lsi05g01187 663679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01187 643 Pfam Herpesviridae UL52/UL70 DNA primase 479 540 - -
Lsi05g01187 643 MobiDBLite consensus disorder prediction 69 107 - -
Lsi05g01187 643 PANTHER DNA-DIRECTED PRIMASE / POLYMERASE PROTEIN 64 611 IPR044917 GO:0003887|GO:0003896|GO:0042276
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01187 K22761 PRIMPOL; DNA-directed primase/polymerase protein [EC:2.7.7.102 2.7.7.7] - csv:101209857 1038.48
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g781 . . Bda05g00095 . Bpe03g00261 . Bma10g01257 . Cmo16g00102 . . . . . . . . Bhi01g01413 . . . . . . . . . . . . . Cone1ag1196 . . . Lsi05g01187 . . . Blo07g00371 . . . . . . . . . . Cma16g00095 . Car16g00085 . . . . . . . . . . Cla05g00920 Cam05g1008 Cec05g1012 Cco05g1008 Clacu05g0996 . . . Csa03g01753 Chy06g00982 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009435 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01187 Lsi_Chr05 FPKM 3.946575 5.478878 5.402893 6.043913 8.898554 5.683372 8.428342 4.695903 5.531438 7.158918