Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01188 ATGGCTGCAAATGATGTTCCATGCTGTGAGCCAAGGTTCTGGATGTATCTTTTGATATGTGTAGGTTTGGTTGCTTTTGCTGGTCTTATGTCGGGCCTTACGCTAGGACTTATGTCGCTCAGCTTGGTTGATCTTGAGGTTCTTGTCAAATCTGGCAGGCCTGATGACCGCAAAAATGCCGCTAAAATTCTGCCCATAGCAAAGAACCAGCATTTGCTTCTTTGCACACTCCTCATAAGCAATGCTATGGCTATGGAGGCACTGCCTATCTTCATTGATGCACTTCTCCCAGCTTGGGGTGCAATTGTGATATCAGTCACTCTCATACTAACTTTTGGAGAGATTATTCCTCAAGCTATATGTTCGAGGTATGGACTGAGTGTCGGCGCAAAGCTGTCCGTTGTTGTTCGGGTGCTTCTCTTAGTCCTCTTTCCTTTATCTTACCCCATCAGTAAGTTATTAGATTGGCTTCTGGGCAAGGGGCATTCTGCACTTCTAAGAAGGGCAGAGCTCAAGACCTTTGTGGATATGCATGGGAACAAGGCAGGCAAAGGTGGAGAATTGACTCAAGAAGAAACTACCATAATCACTGGAGCTTTGGACATGACACTCAAAACTGCCAAAGATGCTATGACTCCTTTATCCAAATTGTTTTCACTTGATATAAATTCCAAACTTGATGAGAAAACCATGGAGCTGATTTTAAGAAAAGGACATAGTCGAGTGCCGATATACTCGGGGCATCCAACTAATATCATTGGCATTATTTTGGTTAAAAATCTGATAAAATTTCATCCACAGGATGAAACTCCCATCAGAAATCTCACCATCAGAAAAGTTCCTAGGGTACATGAGAACTTACCTTTGTATGACATTTTGAACCAGTTCCAGCAAGGACATAGTCATATGGCTGTTGTCATAAAGAATCATAAGGAAGCCAGAGAGGCTGCAGATTCTAACGAATCAAAACTCGAAAACGCAACACCGGTAACTGAGACGGAGTTAGGACATATTAAGCTGCAGATAAGGAATATTTACTCTAATGGTAATAGCAATACTGAAGGAAAATCAATTCCAGATTTTGATGAAGATGTTATTGGTATCATAACACTAGAGGATGTCATGGAAGAACTTTTACAGGAAGAGATATTGGATGAGACTGATGAATATGTTGCTGTTCACAACAAGTAA 1191 41.31 MAANDVPCCEPRFWMYLLICVGLVAFAGLMSGLTLGLMSLSLVDLEVLVKSGRPDDRKNAAKILPIAKNQHLLLCTLLISNAMAMEALPIFIDALLPAWGAIVISVTLILTFGEIIPQAICSRYGLSVGAKLSVVVRVLLLVLFPLSYPISKLLDWLLGKGHSALLRRAELKTFVDMHGNKAGKGGELTQEETTIITGALDMTLKTAKDAMTPLSKLFSLDINSKLDEKTMELILRKGHSRVPIYSGHPTNIIGIILVKNLIKFHPQDETPIRNLTIRKVPRVHENLPLYDILNQFQQGHSHMAVVIKNHKEAREAADSNESKLENATPVTETELGHIKLQIRNIYSNGNSNTEGKSIPDFDEDVIGIITLEDVMEELLQEEILDETDEYVAVHNK 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19785605 19791523 + Lsi05G011880.1 Lsi05g01188 663680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01188 396 Pfam Cyclin M transmembrane N-terminal domain 18 188 IPR002550 -
Lsi05g01188 396 ProSiteProfiles CNNM transmembrane domain profile. 9 192 IPR002550 -
Lsi05g01188 396 CDD CBS_pair_CorC_HlyC_assoc 206 307 IPR044751 -
Lsi05g01188 396 SUPERFAMILY CBS-domain pair 196 380 IPR046342 -
Lsi05g01188 396 ProSiteProfiles CBS domain profile. 211 272 IPR000644 -
Lsi05g01188 396 Coils Coil 307 327 - -
Lsi05g01188 396 Gene3D - 333 386 IPR046342 -
Lsi05g01188 396 Gene3D - 192 327 IPR046342 -
Lsi05g01188 396 PANTHER DOMAIN-CONTAINING PROTEIN, PUTATIVE, EXPRESSED-RELATED 1 396 - -
Lsi05g01188 396 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 396 IPR045095 GO:0010960
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01188 K16302 CNNM; metal transporter CNNM - csv:101210102 703.36
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00638 Lsi-Chr3:7933581 Lsi05g01188 Lsi-Chr5:19785605 3.66E-162 dispersed
Lsi04g01664 Lsi-Chr4:24066683 Lsi05g01188 Lsi-Chr5:19785605 2.66E-39 dispersed
Lsi05g01188 Lsi-Chr5:19785605 Lsi09g01359 Lsi-Chr9:21610109 1.53E-142 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g773 . . . . Bpe03g00157 . . . Cmo16g00103 . . . . . Sed13g0543 . Cpe14g00080 Bhi01g01589 Tan01g0786 . . . Mch10g0553 . . . . . . . . Cone1ag1195 . . Cone15ag0060 Lsi05g01188 . . . . Blo09g00058 . . . . . . . . . Cma16g00096 . Car16g00086 . . . . . . . . . . Cla05g00919 Cam05g1007 Cec05g1011 Cco05g1007 Clacu05g0995 Cmu05g0950 Cre05g1031 . Csa03g01752 Chy06g00981 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007021 1 9 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01188 Lsi_Chr05 FPKM 2.181657 2.202728 2.421518 2.507516 5.351737 5.040825 6.189801 1.495105 1.484992 2.028046