Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01193 CTGCATGAGAGTTCAATGGCAGATGTGAAAATGGTTGATGTTGAGACCTTCGCCTTCCAAGCCGAAATTAACCAGCTTCTCGAGCGCAAACTCGACGCTCAACAAGAGCTCTTCATCAGGATTGTTTCGGACAAGGTTAACAAAACTCTCTCCATCATGGATAGTGGAGTCGGAATGACTAAAGCAAATCTGGTGAATAACTTGGGAACCATCTCAAGGACCAAAGAATTCATGGAGGCATTGCAAGTCAGCGCCGACGTGAACATGATTGGTCAATTTGGTGTAGGGTTCTATTCTAAGGGAAAAGAAAAAAAAAAGGTAGAACCTAGAGTATGGCAGATTCAGAAAATTTCAACAAGAAAGATGTGCAACAAATTCCTGTATGCAAAATATAAATACAAGAGGTTGTTTGGCGATGTTGACGGGCGATTAGTCTTCAATAAGGGAAAGAAAGAAGTTTCGAAGTAA 468 41.24 LHESSMADVKMVDVETFAFQAEINQLLERKLDAQQELFIRIVSDKVNKTLSIMDSGVGMTKANLVNNLGTISRTKEFMEALQVSADVNMIGQFGVGFYSKGKEKKKVEPRVWQIQKISTRKMCNKFLYAKYKYKRLFGDVDGRLVFNKGKKEVSK 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19805911 19807370 - Lsi05G011930.1 Lsi05g01193 663685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01193 155 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 29 100 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Lsi05g01193 155 Gene3D - 18 109 IPR036890 -
Lsi05g01193 155 PANTHER HEAT SHOCK PROTEIN 90-1 29 100 - -
Lsi05g01193 155 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 15 99 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01193 K04079 HSP90A, htpG; molecular chaperone HtpG - jre:109010830 136.346
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01193 Lsi-Chr5:19805911 Lsi06g00096 Lsi-Chr6:977997 3.54E-35 dispersed
Lsi05g01193 Lsi-Chr5:19805911 Lsi06g00094 Lsi-Chr6:928198 2.71E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g762 Blo06g01136 Blo15g00109 . . . . . . Cmo16g00105 . . . . . . . Cpe14g00083 . . . . . . . . . . . . . . Cone1ag1191 Cone5ag0892 . . Lsi05g01193 . . . . . . Bda15g00711 . Bpe12g00442 Bma08g00293 . . . . Cma16g00098 . Car16g00088 . . . . . . . . . . . . . . . . . . Csa03g01748 Chy06g00977 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000587 3 3 3 2 4 2 5 5 4 3 3 3 4 4 3 4 3 7 3 3 3 4 5 0 4 3 1 4 4 3 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01193 Lsi_Chr05 FPKM 33.247952 35.086086 34.752331 36.264084 201.284866 163.893158 166.397415 32.195366 32.577499 31.970526