Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01195 ATGGCTGTCCAGCCGAACAGTATGGGAGTGAAACGATGGGTTCTGATTGTTACTTCTGTTCTCGTTTTGCTTCTTCTCGTTGTCATTCTTGCCTTCATTTTTCAAGTCTATTGTCGTCGGAGGAGGCGGAATCGGAACCGTCGAAATGAAGATCGTGAAGCTGCGATTTCGGGCGAAGTTCTACCGGAGACGGAGATGAAGGTAAAGAAGGGTTCCGATCATCAATTTTCACTACAGGGTAGTCAGACTACTCAGCATAGTATTGTCACAGATTGGGAGTATTCAGCGGATCGATACTCCCTGGCGGCGTTTAAGGACCGGCGGAGAAGGAGCACATTTGCGCTGGAAGAGATTGCTTTGTCGACCGATGGATTCAGCGAAGAAAATGTCATTAGTATCGAAGATTTCGGTGTCGATTACTATGGAAATTTGGCGGACGATACAAAAGTGATTGTTAAGATATTCAATGCAGATAACAGTTTTGGGGACAACGAGTTCATCAGAGAAGCAGAGAGAATTAGGCATATTAGCCATAAAAATCTGATCAAGTTGCTTGGATACTGCACCCAAGGATTTGCTAACAATAGGATGTTTGTTTATGAAAATGTGGATAATGGGAATTTGCATCAGTGGCTTCATGGATGTCCACAGAATCCCTTTAGCCCTCTGACATGGTCCATTAGGATGGACATTATTCAAGGAATTGCAAAAGGATTAGCATATCTTCATGAAGATGTTGAACCACAAATTGTTCATGGCAGGCTTAGATCCAGCTGCATATTACTTGATCAGCATTGGAATCCTAAGATTGCCAATTTCGGTCTAGTTGAGCTTTTGCCTTTGGAGTACTCGCCTGGACCTTTGGTTGGAGAAACTCCATTCACAGAGAAGAATGATGTTTATAGCTTTGGTATACTTCTCTTGGAGATGATAACTGGAAGAGCTTCTGTGGACTGCAATCAATCACAACCAGATTTGACAGAGTGGGTGAAATCAATGATTGGGAATCAACAGACATTTGAAACAGTTGATTCCAAATTGGAAGAAAAACCATCCTCAAAGCAACTTAAACGGATGCTTTTAATTGCCCTTCGCTGTGTTGATCCAGACATACAGCACAGGCCCTCTATGGGCCAAGTCCTTCTCATGCTTCAGCCTCACGACCTTTTACTCATTGATGTACGTGACCACCATAGATTGAACCGACGACCACCTCTTGGCCATGGATTGAACCCACTA 1239 43.42 MAVQPNSMGVKRWVLIVTSVLVLLLLVVILAFIFQVYCRRRRRNRNRRNEDREAAISGEVLPETEMKVKKGSDHQFSLQGSQTTQHSIVTDWEYSADRYSLAAFKDRRRRSTFALEEIALSTDGFSEENVISIEDFGVDYYGNLADDTKVIVKIFNADNSFGDNEFIREAERIRHISHKNLIKLLGYCTQGFANNRMFVYENVDNGNLHQWLHGCPQNPFSPLTWSIRMDIIQGIAKGLAYLHEDVEPQIVHGRLRSSCILLDQHWNPKIANFGLVELLPLEYSPGPLVGETPFTEKNDVYSFGILLLEMITGRASVDCNQSQPDLTEWVKSMIGNQQTFETVDSKLEEKPSSKQLKRMLLIALRCVDPDIQHRPSMGQVLLMLQPHDLLLIDVRDHHRLNRRPPLGHGLNPL 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19815987 19818795 + Lsi05G011950.1 Lsi05g01195 663687

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01195 413 PANTHER BNAC04G54280D PROTEIN 8 399 - -
Lsi05g01195 413 SUPERFAMILY Protein kinase-like (PK-like) 110 384 IPR011009 -
Lsi05g01195 413 ProSiteProfiles Protein kinase domain profile. 125 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01195 413 PANTHER OS01G0323000 PROTEIN 8 399 - -
Lsi05g01195 413 Pfam Protein tyrosine and serine/threonine kinase 146 381 IPR001245 GO:0004672|GO:0006468
Lsi05g01195 413 Gene3D Transferase(Phosphotransferase) domain 1 203 390 - -
Lsi05g01195 413 Gene3D Phosphorylase Kinase; domain 1 64 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01195 - - - bhj:120069722 650.588
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01195 Lsi-Chr5:19815987 Lsi08g01486 Lsi-Chr8:23012388 3.29E-82 dispersed
Lsi05g01195 Lsi-Chr5:19815987 Lsi05g02060 Lsi-Chr5:27511818 3.09E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g760 . . . . . . . . . . . . . . . . Cpe14g00085 . . . . . . . . . . . . . . . . . . Lsi05g01195 . . . . . . . . . . . . . . . . Car16g00090 Car18g01179 . . . . . . . . . Cla05g00913 . . . . . . . . Chy06g00975 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013667 0 0 0 0 0 1 2 0 1 1 1 1 0 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 26
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83653 PF07714 PK_Tyr_Ser-Thr 3.50E-28 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01195 Lsi_Chr05 FPKM 0.416667 0.541338 12.767569 11.527627 47.853996 46.128014 47.599152 0.0 0.0 0.0