Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01196 ATGGCGGCCGGCCTCTCCGCCGCCTTAGTGCCCAAACCACTCCATCTCTTCCTTACTTCCTCCCATCTCTCCCCTAAACCTCGAACTCCGTTTCTGTTTCCACCTTCAGTCTTCCGGAACAGTAGATTCCAATGGAAGATGCGGAGAAAAGCTCTGTTCACTGTCTGTGTACTCGTTGAGGATCAAAATAGTTCCGGCGAGGTGGAGAATCTCTCCGATGAAGAATTGCCGATTGTAGTCCCTCAGATCCCATCGCCTCATGTTTCAGAAAGATTGGCGAGGAAAAAATCGGAGCGCTTCACTTATCTTGTTGCTGCGGTTATGTCTAGTTTCGGAATTACCTCCATGGCTGTCATGGCGGTTTACTACCGATTTTACTGGCAAATGGAGGGCGGAGAGATTCCTTTCTCTGAAATGTTTGGTACATTTTCTCTCTCTGTTGGTGCCGCTGTCGGCATGGAGTTCTGGGCGAGATGGGCTCATAGGGCTCTCTGGCACTCTTCCTTATGGCATATGCACGAGTCGCACCATAAACCAAGAGAAGGACCGTTCGAATTAAACGATGTTTTCGCCATTACCAACGCTGTGCCCGCCATAGCACTCCTTTCTTACGGCTTCTTCCATAAAGGCCTTGTCCCTGGTCTCTGCTTCGGCGCTCTTCATCATTCAGACAAGTTCAACGGTGTGCCATACGGGCTATTTTTGGGTCCGAAGGAATTAGAGGAAGTGGGAGGTCTAGAAGAATTGGAGAAGGAAATCAACAGAAGAATAAAATTGACGGCCCCAAAATCAATCGACTGTTCTTCTTCAACCAATATTATGTGA 825 48.48 MAAGLSAALVPKPLHLFLTSSHLSPKPRTPFLFPPSVFRNSRFQWKMRRKALFTVCVLVEDQNSSGEVENLSDEELPIVVPQIPSPHVSERLARKKSERFTYLVAAVMSSFGITSMAVMAVYYRFYWQMEGGEIPFSEMFGTFSLSVGAAVGMEFWARWAHRALWHSSLWHMHESHHKPREGPFELNDVFAITNAVPAIALLSYGFFHKGLVPGLCFGALHHSDKFNGVPYGLFLGPKELEEVGGLEELEKEINRRIKLTAPKSIDCSSSTNIM 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19829087 19832862 + Lsi05G011960.1 Lsi05g01196 663688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01196 274 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 15 219 IPR045019 GO:0016491
Lsi05g01196 274 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 220 260 IPR045019 GO:0016491
Lsi05g01196 274 PANTHER BETA-CAROTENE HYDROXYLASE 15 219 - -
Lsi05g01196 274 PANTHER BETA-CAROTENE HYDROXYLASE 220 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01196 Lsi-Chr5:19829087 Lsi09g00227 Lsi-Chr9:2375121 2.80E-55 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01196 K15746 - csv:101212140 488.034