Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01198 ATGCGCGTACTCTTAATGAGCCGTTTATTGACAGTTATATTCTATTCAATCCACAGCCATCAGGGAAGGGCTCATTGTTTGCTGCTACCATTGGAATATAATAGAGCATCTCTTGGTTCATTTGATATGCACAAAATGGATAAGTGGAAAGGTTCTGGAAAACTAGGACGACTGGTGCCGAGAGGTGGTTCTATGACTTCTTACAAGTATGCTCTTTTGTTGTCACCTGTTGTCTCTGTCTGGGATTGCATTGTCAGGAAAATGAGGTATTCCTACAGACCTGAGTGGTTAGATATGGCTAGTTTTGTGGCTAGTATGGGTAATAAAGGACAACCTATCGTGAAGAAAGCAAAAAAGAAGCAGGTGAAGGATGAGTTGGATCGTCAGAAACAAGCTGAGAAGAAAAAGAGACGGTTAGAAAAAGCCCTTGCTACTTCAGCAGCTATTATATCTGAACTTGAAAAGAAAAAACAAATGAAGAAGGAAGAACAGCAAAGGCTAGATGAAGAAGGTGCTGCTATTGCTGAGGCTGTTGCTCTGCATGTCTTGATTGGTGAAGATTCAGATGACTCATACAAGATTCTTCTTAAGAACGATGGTCTCAACCCTTGGGAGTGCCCTGAGCAGTTCGACCACGTAATGAATGTTACAAGACCTGGCATTCCAGTGCAGGAGTTCGGGAGGTGTTCCCTCGAAGGGACTGGTTGGACCTCTAATATCGATAGATTTGGATCAATGTGGCACGGTTTTACGAATGACTACTGGTCAGTTTCAGCTGGACCTTATGCCGAAGATCACCACACTTTATGTTTCGAGCAAGTTGATGGTGCTGTAAATGAGATTTCTGCTGGTATTATAGCGGCACAGGCTGTCTCATCACTTCAGATAACGGTAGATGGGGATGAAGAAATCAATGTCCTTAACAGAATGCGAAGGGACTCTGTAGAAGATATCACGTTGTTCGTTGCCCCTAGTAGAAAACGTAAAAATCTTACACGAACTGCTGTGTTTCCAGCTACTTCCAATGCAGCATCACCAGCATTGGCAAACCGATTAACCCAACCTACAACAGGATAA 1077 43.08 MRVLLMSRLLTVIFYSIHSHQGRAHCLLLPLEYNRASLGSFDMHKMDKWKGSGKLGRLVPRGGSMTSYKYALLLSPVVSVWDCIVRKMRYSYRPEWLDMASFVASMGNKGQPIVKKAKKKQVKDELDRQKQAEKKKRRLEKALATSAAIISELEKKKQMKKEEQQRLDEEGAAIAEAVALHVLIGEDSDDSYKILLKNDGLNPWECPEQFDHVMNVTRPGIPVQEFGRCSLEGTGWTSNIDRFGSMWHGFTNDYWSVSAGPYAEDHHTLCFEQVDGAVNEISAGIIAAQAVSSLQITVDGDEEINVLNRMRRDSVEDITLFVAPSRKRKNLTRTAVFPATSNAASPALANRLTQPTTG 358
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19845238 19850106 + Lsi05G011980.1 Lsi05g01198 663690

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01198 358 Coils Coil 115 173 - -
Lsi05g01198 358 MobiDBLite consensus disorder prediction 117 139 - -
Lsi05g01198 358 PANTHER OS02G0104200 PROTEIN 99 312 - -
Lsi05g01198 358 PANTHER OS02G0104200 PROTEIN 99 312 - -
Lsi05g01198 358 MobiDBLite consensus disorder prediction 113 139 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01198 - - - csv:101212865 395.971
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g752 . . . Bda07g01900 Bpe03g00151 . Bma10g01246 Bma14g02046 Cmo16g00109 Cmo18g01297 . . . . . . Cpe14g00088 . . . . . . . . . . . . . . . . Cone14ag0060 . Lsi05g01198 . . . . . . . . . . . . . . Cma16g00102 Cma18g01267 . Car18g01176 Cpe09g00070 . . . . . . . . Cla05g00909 Cam05g0995 Cec05g0998 Cco05g0996 Clacu05g0983 Cmu05g0939 Cre05g1023 . Csa03g01743 Chy06g00973 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003943 1 0 0 2 2 1 2 1 1 1 1 1 2 1 2 2 1 0 2 1 1 1 1 1 2 1 1 6 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01198 Lsi_Chr05 FPKM 24.554296 30.667524 21.014137 23.323444 48.437515 50.278095 53.421337 15.045238 14.066038 14.135793