Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01200 ATGGCTCTGGCTCTGCCTCCGTTCCCACACCAAACCATTTCCATTTTAAGGCTAAACTTCTTCCTTCTCTGCAACTCTCTGCCGCCTCCCATGGCGATCTCCAAATTCCTCTTTCTTCTCATTCTTTTTCTTTTCCTTCCTTTTCTTTCTGCTGATTTTGTTCCCTCTGACATTTACCTTCTCAGCTGCGGCTCATCCTCTAATTCTTCCTTTTTTAATCGCATCTTCGTCGGCGATTCATTGAAACCCGCCTCCGACTTTCTCGCCGCCAGTAAATCGGTGGTCGTTTCCGATCGAAATCCACCTCCGGATTCTCCCTCTTTGTATCACACAGCCAGAGTTTTCACCAGGGCCTCAAGCTACAAGTTCAACATCAAGAAGAACGGTACTCACTTGTTACGGTTCCATCTTTCGCCATTTTCGGCGCCGGAATTCGCTTTACATTCTGCAAATTTCACTATCTCGGCTAATGGAGTTTTTCTTTCTAGTATTTCTCACGTTAACGATTCTGTAATTAAAGAGTTTATGGTGAGAATTGACACCAACGTGCTTGAACTTGAGTTCGAACCGGCTTCGAGTTCGGGTTTTGGATTCGCGAATGCAATCGAGGTATTTTCAGCTCCTAAAGAACTCATTAACGATAATGGAGCTAAGCTTGTGGATTCTAATGGAGGTCGAGAATATTACAAACTCACATCACAAATTTTGGAAACCAAATACAGAATTAACGTTGGGGGTCCAAAATTGACCCCATTTAACGACACTCTATGGAGAACTTGGGTCCCCGATGAGCCTTACCTGGCTTTAAAGTCGGCGGCAAAGCTCGCCGCAACTTTTCACACTCCGAACTACGAGGCCGGCGGGGCCACCAGGGAGGTCGCGCCGGACATCGTTTATATGACGGCGCAGCAGATGAACAAGGATAACTCAATTTCGGGTGCAAAATTTAACCTCACCTGGAATTTTCCATTGGATTCTGATGGCGTGAAGCACTTGGTTCGTTTGCATTTCTGTGATATTGTTAGCTCTGCTCTTAATCAGTTATATTTCAATGTGTATATCAATGGCTATCCTGCATATAGGGACCTGGATTTGTCATCTTTTTCCCTTCAGCTTTCAACTCCTTTTTATTCTGATTTCATTGTGGATTCTGGTAGTTCTGGGAATATTCAGATTAGTGTTGGACCGTCTGATCTGAGCAGTTCTTTGAGATATAATGCGATCTTAAATGGAGCAGAGATCATGGAAATGGTGAATGCTAAGGATATATTTTCAGAAACTGAGAAAAGGAAAAGAAATTTATGGGTTATTATAGGTCCTGTTGTTGGTGGATTTGTTGGTTTATGTTTGGTTGTTGCTGCAATTCTTGCTTTCGGATGCAAGAGGAGGAAGAAACCGAAGCCGAGGCGGGCGGAGAGCGGAGGCTGGACTTCGGTTCAGGTGTATGGAGGAGGCAGTTCTGATAGTAAATTATCAAGGGGATCAACTCTTACATCTTTTGGGCCAAATGGATACCACGGCTTGAAGATCCCCTTCAGTGAAATTCAATCAGCAACAAACAATTTCGACAAGAGTTTGATCATTGGTTCGGGCGGATTTGGTATGGTTTACAAAGGGGTTCTTCGGGACAATATAAAGGTTGCTGTGAAGAGAGGCGTGCCAGGATCACGGCAGGGCCTTCCTGAATTCCACACAGAGATTGCTATCTTGTCGAAGATTCGACATCACCATCTTGTTTCGCTTGTTGGATACTGTGAAGAACAGTCAGAAATGATACTGGTTTATGAATATATGGAGAAAGGTCCATTGAAAAAGCAGTTGTATGGCCCGGTCGTATCGCCATTGTCGTGGAAGCAACGGCTCGAAATCTGCATTGGTGCAGCCAGAGGTCTTCACTACCTCCACACTGGTTTTGCACAGGGCATCATCCACCGTGATATCAAGTCCACCAACATTTTGCTCGATGAGAATTATGTTGCTAAAGTTGCTGATTTTGGTCTTTCGAGATCGGGGCCTCGTCTCGACGAGACACATGTTAGTACTGGAGTAAAAGGTAGCTTTGGCTATTTAGATCCGGAGTACTTTCGAAGACAACAACTAACTGATAAGTCAGATGTGTATTCATTTGGAGTAGTACTCTTTGAAGTTCTTTGTGCTAGGCCTGCTGTTGATCCATTGCTTGCTAGGGAACAAGTAAATCTCGCGGAATGGGCACTGCATTGGCAAAGGAAAGGGATGCTCGAAAAGATTGTCGATCCACATTTGGTCGGGCAAATCAATCCGAATTCGTTAAAGAAATATGGAGAAACAGCAGAAAAATGTTTGGCTGACTATGGTATTGACAGACCAACCATGGGGGATGTCTTATGGAACTTGGAATATGTTCTTCAACTACAAATCGGTCCATCAAATGAACCATCGGAACCCGTGGACGTCGACGACTCCGACTTTCCAACATCCACAGCTATTCATCCGAGCAACTTGAGGAGACATTCAGATGAAAGTACTGGTAATTATTCAGACATAAGTACAACCAAAGTTTTCTCCCAGTTGCTTACTAACGATGGAAGATAG 2574 44.13 MALALPPFPHQTISILRLNFFLLCNSLPPPMAISKFLFLLILFLFLPFLSADFVPSDIYLLSCGSSSNSSFFNRIFVGDSLKPASDFLAASKSVVVSDRNPPPDSPSLYHTARVFTRASSYKFNIKKNGTHLLRFHLSPFSAPEFALHSANFTISANGVFLSSISHVNDSVIKEFMVRIDTNVLELEFEPASSSGFGFANAIEVFSAPKELINDNGAKLVDSNGGREYYKLTSQILETKYRINVGGPKLTPFNDTLWRTWVPDEPYLALKSAAKLAATFHTPNYEAGGATREVAPDIVYMTAQQMNKDNSISGAKFNLTWNFPLDSDGVKHLVRLHFCDIVSSALNQLYFNVYINGYPAYRDLDLSSFSLQLSTPFYSDFIVDSGSSGNIQISVGPSDLSSSLRYNAILNGAEIMEMVNAKDIFSETEKRKRNLWVIIGPVVGGFVGLCLVVAAILAFGCKRRKKPKPRRAESGGWTSVQVYGGGSSDSKLSRGSTLTSFGPNGYHGLKIPFSEIQSATNNFDKSLIIGSGGFGMVYKGVLRDNIKVAVKRGVPGSRQGLPEFHTEIAILSKIRHHHLVSLVGYCEEQSEMILVYEYMEKGPLKKQLYGPVVSPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDENYVAKVADFGLSRSGPRLDETHVSTGVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEVLCARPAVDPLLAREQVNLAEWALHWQRKGMLEKIVDPHLVGQINPNSLKKYGETAEKCLADYGIDRPTMGDVLWNLEYVLQLQIGPSNEPSEPVDVDDSDFPTSTAIHPSNLRRHSDESTGNYSDISTTKVFSQLLTNDGR 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19858103 19860676 - Lsi05G012000.1 Lsi05g01200 663692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01200 857 ProSitePatterns Serine/Threonine protein kinases active-site signature. 642 654 IPR008271 GO:0004672|GO:0006468
Lsi05g01200 857 MobiDBLite consensus disorder prediction 804 841 - -
Lsi05g01200 857 SMART serkin_6 522 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01200 857 Gene3D Phosphorylase Kinase; domain 1 488 597 - -
Lsi05g01200 857 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 46 809 - -
Lsi05g01200 857 Pfam Protein tyrosine and serine/threonine kinase 527 719 IPR001245 GO:0004672|GO:0006468
Lsi05g01200 857 SUPERFAMILY Protein kinase-like (PK-like) 502 792 IPR011009 -
Lsi05g01200 857 Pfam Malectin-like domain 61 416 IPR024788 -
Lsi05g01200 857 Gene3D - 236 420 - -
Lsi05g01200 857 Gene3D - 57 208 - -
Lsi05g01200 857 ProSitePatterns Protein kinases ATP-binding region signature. 528 550 IPR017441 GO:0005524
Lsi05g01200 857 ProSiteProfiles Protein kinase domain profile. 522 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01200 857 Gene3D Transferase(Phosphotransferase) domain 1 598 805 - -
Lsi05g01200 857 PANTHER OS07G0166700 PROTEIN 46 809 IPR045272 GO:0004714|GO:0006468
Lsi05g01200 857 CDD STKc_IRAK 528 793 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01200 - - - csv:101211413 1495.72
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00726 Lsi-Chr4:6643541 Lsi05g01200 Lsi-Chr5:19858103 0 dispersed
Lsi05g01200 Lsi-Chr5:19858103 Lsi06g01446 Lsi-Chr6:25020241 0 dispersed
Lsi09g01589 Lsi-Chr9:24022992 Lsi05g01200 Lsi-Chr5:19858103 1.98E-85 dispersed
Lsi05g01200 Lsi-Chr5:19858103 Lsi10g01334 Lsi-Chr10:17550759 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g749 . . . Bda07g01898 Bpe03g00149 . . Bma14g02048 Cmo16g00112 Cmo18g01293 . . . . . . Cpe14g00089 . . . . . . . . . . . . . . . . . . Lsi05g01200 . . . . Blo09g00068 . . . . . . . . . Cma16g00104 Cma18g01264 Car16g00093 Car18g01174 Cpe09g00072 . . . . . . . . Cla05g00907 . . . . . . . Csa03g01740 Chy06g00971 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009011 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 0 0 1 0 1 0 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83654 PF12819 Malectin_like 9.20E-32 CL0202 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01200 Lsi_Chr05 FPKM 2.192846 1.862618 1.928487 1.875286 2.019418 2.294669 2.340635 1.201372 1.299747 1.023101