Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01201 ATGGCTTCACAGTCACAGCTCGCAAATCTTCACTCGAAGTCACCATGTTTGTCTTCCTGCAAATTCTCTGTCGGATTCTCCAGGAGAATCGCGATGGCACCTCAGCCACCGGTGCAACCGTTATCGTCATCTTCATTAGCGGCTGAAATTGTAGGCCGGAGATTCTGGAAATATCGGAAATCCAGCACCGGAAATGTTCAACTGAGACGAGATGTTGCTGTTAAATCTCATCTGAAATTGAATCTCCCCCTCATTTCTCCGCACGACCAATGGGGCAACTGGACTGTTTTATTCTCCATAGGAGCCTTCGGTATCTGGTCCGAGAAAACAAAGATTGGCAGTGCATTAAGTGGTGCCTTAGTGAGCACATTGGTAGGACTTGCAGCCAGTAATTTTGGGATCATTGCATCTGATGCCCCAGCTTTTCCTATTGTTTTGGAATTTTTGCTACCGTTAGCAGTTCCTTTGCTGTTATTTAGAGCAGATTTGCGTTGGGTAATAAAGTCAACAGGGACACTTCTCTTGGCATTTTTGTTAGGTTCAGTTTCAACAACAATTGGAACTGTAGTAGCCTATTTTCTTGTACCAATGCGATCACTTGGTCAAGACAGTTGGAAAATTGCCGCCGCACTGATGGGAAGACATATTGGTGGAGCTGTCAACTATGTTGCTATATCTGATGCTCTTGGTGTTTCTCCATCAATATTAGCTGCTGGACTTGCTGCAGATAATGTAATTTGTGCAGTATATTTTGCAACATTGTTTGCATTAGCATCTAAAGTACCTCCTGAACCTACGATATTGAACAATGGTGCGGATGTTGAGAAGGACGCAGAATTTGAGCCTAGCAACAAGCTTCCGGTGTTACAATCTGCCACAGCCATTGTTGTATCATTTGCCATTTGTAAAGTTGGTTCCTACCTGACCAAACATTTTGGAATTCAAGGTGGTAGCATGCCAGCAATTACAACCGTCATTGTTGTCTTAGCAACCATTTTTCCTAAGCTGTTTGCTTACCTTTCTCCTTCTGGTGAGGCTATGGCTATGATTCTAATGCAGGTTTTCTTTACTGTAGTGGGAGCAAGTGGAAATGTATGGAGTGTCATCAACACTGCACCAAGTATCTTCGTATTTGCCTTTGTCCAGATTGCAGTCCATCTTGCCATAATCATTGGTCTTGGAAAGCTGCTTCGCTTCGATCTAAAGTCGTTGCTGATAGCATCGAATGCCAACATTGGAGGTCCCACAACAGCTTGCGGGATGGCCACAGCTAAGGGTTGGAGTTCATTGGTTATTCCTGGAATTCTTGCTGGAATTTTCGGAATCGCTATTGCAACTTTCCTAGGGATTGGATTTGGAATGATGGTCTTGAAATACATGTAA 1383 43.67 MASQSQLANLHSKSPCLSSCKFSVGFSRRIAMAPQPPVQPLSSSSLAAEIVGRRFWKYRKSSTGNVQLRRDVAVKSHLKLNLPLISPHDQWGNWTVLFSIGAFGIWSEKTKIGSALSGALVSTLVGLAASNFGIIASDAPAFPIVLEFLLPLAVPLLLFRADLRWVIKSTGTLLLAFLLGSVSTTIGTVVAYFLVPMRSLGQDSWKIAAALMGRHIGGAVNYVAISDALGVSPSILAAGLAADNVICAVYFATLFALASKVPPEPTILNNGADVEKDAEFEPSNKLPVLQSATAIVVSFAICKVGSYLTKHFGIQGGSMPAITTVIVVLATIFPKLFAYLSPSGEAMAMILMQVFFTVVGASGNVWSVINTAPSIFVFAFVQIAVHLAIIIGLGKLLRFDLKSLLIASNANIGGPTTACGMATAKGWSSLVIPGILAGIFGIAIATFLGIGFGMMVLKYM 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19874470 19880749 + Lsi05G012010.1 Lsi05g01201 663693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01201 460 Pfam Protein of unknown function (DUF819) 95 458 IPR008537 -
Lsi05g01201 460 PANTHER PROTEIN, PUTATIVE (DUF819)-RELATED 52 460 IPR008537 -
Lsi05g01201 460 PANTHER PROTEIN, PUTATIVE (DUF819)-RELATED 52 460 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01201 - - - csv:101211894 751.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01201 Lsi-Chr5:19874470 Lsi09g00083 Lsi-Chr9:704561 2.78E-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g747 . . Bda05g00091 . Bpe03g00269 . Bma10g01241 . . . Cma02g01077 . Car02g00820 . . . . . . . . . . . . . . . . . . Cone1ag1186 . . . Lsi05g01201 . Chy09g01385 . Blo07g00382 . . . . . . . . Cmo02g01094 . . . . . . . Bhi12g00788 . . . . . Lcy12g0053 Cla05g00906 Cam05g0991 Cec05g0995 Cco05g0993 Clacu05g0979 Cmu05g0936 Cre05g1019 . Csa03g01739 Chy06g00970 Cme09g01930
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001720 1 1 2 4 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 1 2 2 3 2 3 9 2 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01201 Lsi_Chr05 FPKM 10.281727 12.371343 9.152319 9.084386 10.117141 10.851305 10.571555 8.831327 8.280993 8.132962