Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01211 ATGGTCGTTCTCCAAATCATGGCCTCCAAATTTTCAGTTTCCACATTCCCATTTTCCCCTTCTTCCTCATCTGCTTGCTCAAGACTTGCAGCTTCCACTTCCTCTTCCTCTTCCATCTTATACCCCACAACCCCCAAAATTCGTCTCTCCTTGTGTAATTTCCCACTGGGTCTCGGCCTTTTCTCTCCATGGAGTGGTTTAAAGCATTTGGGTATTTCTACCAGAGGAAAGTTTCCCGAGAGAAGAAAGAGAATTCCTAAGGGGAAAGCAGTTTTTGCATCTTTGTTTGGGGTTGGAGCTCCCGAGGCACTGGTTATTGGGGTAGTGGCTCTGTTAGTTTTTGGTCCCAAGGGTCTTGCTGAGGTTGCTCGGACTCTGGGGAAGACCTTACGTGCATTTCAACCCACTATAAAAGAACTTCAGGACGTTTCTAGAGAATTCAAGACCACGCTTGAGCGAGAAATTGGTCTCGATGAAATCTCGAGTTCAGTCAACAGCTCATACAATTCAAGCAAATCAAATACCTACTCAGACCCACCTTCTGTTCCTAAAGCAGAAGAGTCTGTTGCAGTAGCTGAACCAAATGATTCTTCATCAGAAAGCAAAGCATATACCTCTGAAGAGTACCTAAAGGTTACAGAAGAGCAGCTGAAAGCTCAAGATCAGCTCCAAACCAATTTTGCAGCAGAAAGCCAGAGTGGATCCCAAGTACAGCCTGAAGGTTGCTAA 729 45.27 MVVLQIMASKFSVSTFPFSPSSSSACSRLAASTSSSSSILYPTTPKIRLSLCNFPLGLGLFSPWSGLKHLGISTRGKFPERRKRIPKGKAVFASLFGVGAPEALVIGVVALLVFGPKGLAEVARTLGKTLRAFQPTIKELQDVSREFKTTLEREIGLDEISSSVNSSYNSSKSNTYSDPPSVPKAEESVAVAEPNDSSSESKAYTSEEYLKVTEEQLKAQDQLQTNFAAESQSGSQVQPEGC 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19943298 19948720 - Lsi05G012110.1 Lsi05g01211 663703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01211 242 TIGRFAM tatAE: twin arginine-targeting protein translocase, TatA/E family 97 142 IPR006312 GO:0016021|GO:0043953
Lsi05g01211 242 Gene3D - 95 143 - -
Lsi05g01211 242 PANTHER SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA, CHLOROPLASTIC 7 238 - -
Lsi05g01211 242 MobiDBLite consensus disorder prediction 192 206 - -
Lsi05g01211 242 MobiDBLite consensus disorder prediction 222 242 - -
Lsi05g01211 242 MobiDBLite consensus disorder prediction 163 181 - -
Lsi05g01211 242 Pfam mttA/Hcf106 family 98 148 IPR003369 GO:0015031
Lsi05g01211 242 MobiDBLite consensus disorder prediction 163 207 - -
Lsi05g01211 242 PANTHER SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATB, CHLOROPLASTIC 7 238 - -
Lsi05g01211 242 PRINTS Bacterial sec-independent translocation TatB protein signature 115 134 - -
Lsi05g01211 242 PRINTS Bacterial sec-independent translocation TatB protein signature 95 115 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01211 - - - bhj:120081140 363.614
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01211 Lsi-Chr5:19943298 Lsi06g00190 Lsi-Chr6:2058471 3.50E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g730 . . . Bda07g01889 . . . Bma14g02059 Cmo16g00122 . . . . . . . Cpe14g00097 Bhi01g01277 . . . . . . . . . . . . . . . . Cone15ag0071 Lsi05g01211 . . Cme06g01020 . Blo09g00078 . . . . . . . . . Cma16g00111 . Car16g00099 . . . . . . . . . . Cla05g00897 Cam05g0981 Cec05g0986 Cco05g0984 Clacu05g0969 Cmu05g0926 Cre05g1010 . Csa03g01732 Chy06g00963 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006454 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01211 Lsi_Chr05 FPKM 17.526531 16.184746 9.11179 9.828155 9.862024 8.871537 7.562067 8.082991 8.043971 9.688416