Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01212 ATGGGAAGCATGAACAACAGCGTGGATACGGTTAATGCTGCCGCTACTGCGATCGTCTCTGCTGAGGCTCGAGTCCAGCCTCCGACACCTCCGGTAGTGTATCAATTTGTTCGGCTCTTCTGGGCTTTGGTTTTCTTTGTTCTCTTAAGGTTGAGTTTGGCCTGGGCTGAGAATTCCTTTAATGGGAAACGAAGATGGGGTAGCTGCTGGAGTCTGTACTGGTGTTTTGGCATTGGTTCACAGAAAAACAATAAGCGCATCGGTCATGCTGTACTTGTTCCGGAACCTGCAGTACCTGGAGCTGTTGCCCCCGCTGTTGAGCATCGAACACCTTCAACCACCATGGTATTACCTTTCATTGCCCCTCCGTCTTCTCCTGCGTCTTTCCTCCAGTCCGAGCCTCCATCAAATACTCAATCTCCTGCTGGATTACTATCTTTAACTGCTCTTTCAGTCAATAACTACTCCCCGAATGGACCTGCATCCATTTTTGCAATAGGCCCTTATGCGTATGAGACCCAGTTGGTCTCACCTCCAGTTTTTTCTGCCTTCACCACTGAACCATCGACTGCTCCTTTTACTCCTCCTCCTGAGTCTGTGCAACTGACCACACCCTCATCTCCTGAAGTACCATTTGCTAAATTGCTGACATCTTCTCTAAGCCATACTAATAAAAATTTTGGGACTAACCAGAAGTTTACACTTTCACATTGTGATTTCCAGCCTTATCAGCCCTACCCGGGAAGCCCTGGTGCTCATCTTATATCACCTGGATCAGTAATTTCAAACTCTGGTACATCTTCTCCTTTCCCTGATAAACACCCCATTCTTGAGTTCCGCATGGCAGATGCTCCAAAGCTCTTGGGTCTCGAACATTTTACAACTCGCAAATGGATCTCAAGAATGGGTTCTGGATCTTTGACGCCAGATGGTACTGGTTTAGGTTCTAGGTTAGGTTCAGGAACTTTGACCCCTGATGGTATTGGTATGGGTTCGAGATTGGGATCTGGATCTGTGACCCCAAATGGTGTGAGGCAAGATTCAAGATTGGGTTCTGGAACCTTGACCCCTGATGGTTTGGGGCATGGCTTACAAGATGGTCCACTGTTGGACAACCAAATATCTGAGGTGGCTTCCCTTGCCAACTCAGAAAATGGATGTCAAAATGATGTGACAAATCATAGGGTGTCATTTGAGTTAACTGGTGAAGATGTTGCACGCTGTCTTGCAAATAAGTCAATGACATCCAATAGAATTGAATCAGAGTCTCCAAAGCAAACAAGCACAAGCTATCAAAACGAAAACAAAGAATCATCCAGAGAAGCTGAAACTTGTGAGTTCTTTGACATCAAGACTTCCACAGCACTGGAAAAAACTTCAGGAGAGGATGATCAGTGCTACCAAAATCAGCGAGCCGTAACACTTTGTTCGTTCAAAGAGTTCAACTTCAACCAAACGAAAGGAGAAATACACAACACAGCCACCATTGGTGCAGAGTGGTGGGCCAATGAAAAGGTGGCTGTGAAGGAAGCTAGTCCAGGCAACAACTGGACTTTCTTCCCATTGTTGCAACCTGGGGTCAGCTGA 1587 46.31 MGSMNNSVDTVNAAATAIVSAEARVQPPTPPVVYQFVRLFWALVFFVLLRLSLAWAENSFNGKRRWGSCWSLYWCFGIGSQKNNKRIGHAVLVPEPAVPGAVAPAVEHRTPSTTMVLPFIAPPSSPASFLQSEPPSNTQSPAGLLSLTALSVNNYSPNGPASIFAIGPYAYETQLVSPPVFSAFTTEPSTAPFTPPPESVQLTTPSSPEVPFAKLLTSSLSHTNKNFGTNQKFTLSHCDFQPYQPYPGSPGAHLISPGSVISNSGTSSPFPDKHPILEFRMADAPKLLGLEHFTTRKWISRMGSGSLTPDGTGLGSRLGSGTLTPDGIGMGSRLGSGSVTPNGVRQDSRLGSGTLTPDGLGHGLQDGPLLDNQISEVASLANSENGCQNDVTNHRVSFELTGEDVARCLANKSMTSNRIESESPKQTSTSYQNENKESSREAETCEFFDIKTSTALEKTSGEDDQCYQNQRAVTLCSFKEFNFNQTKGEIHNTATIGAEWWANEKVAVKEASPGNNWTFFPLLQPGVS 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19963456 19966627 + Lsi05G012120.1 Lsi05g01212 663704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01212 528 MobiDBLite consensus disorder prediction 329 366 - -
Lsi05g01212 528 MobiDBLite consensus disorder prediction 188 207 - -
Lsi05g01212 528 MobiDBLite consensus disorder prediction 415 435 - -
Lsi05g01212 528 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 1 528 - -
Lsi05g01212 528 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 1 528 IPR040420 -
Lsi05g01212 528 MobiDBLite consensus disorder prediction 415 443 - -
Lsi05g01212 528 MobiDBLite consensus disorder prediction 335 353 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01212 - - - csv:101210841 912.909
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g03007 Lsi-Chr2:36142910 Lsi05g01212 Lsi-Chr5:19963456 3.02E-45 dispersed
Lsi05g01212 Lsi-Chr5:19963456 Lsi07g00886 Lsi-Chr7:10163658 6.29E-96 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g729 . . Bda05g00082 . Bpe03g00139 . Bma10g01232 . Cmo16g00123 Cmo18g01287 . . . . . . Cpe14g00098 Bhi01g01279 Tan01g5193 . . . . . . . . . . . . . . Cone14ag0069 Cone15ag0072 Lsi05g01212 . . Cme06g01019 . . . . . . . . . . . Cma16g00112 Cma18g01260 Car16g00100 Car18g01169 Cpe09g00077 . . . . . . . . Cla05g00896 Cam05g0980 Cec05g0985 Cco05g0983 Clacu05g0968 Cmu05g0925 Cre05g1009 . Csa03g01730 Chy06g00961 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004793 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01212 Lsi_Chr05 FPKM 2.062218 3.507345 3.308986 3.660697 5.374483 4.694739 5.028298 9.981907 9.730009 10.153073