Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01214 ATGCCTTCATGGTGGGGGAAGTCATCCAAAGACGTGAAGAAGAAAACAAGCAAGGAAAGTTTCATTGACTCATTACACCGAAAGTTTAAGAATTCACCTGAAGGTAAAGTAAACAGCAGATCAGGAAGTTCTCGTAAACGTGGTGGTGACACTATATCTGAGAAGGGGTCCAAATCACCAATATCAAGATCACCATCACCTTCCAAAGAAGTAGCTAGATGTCAAAGTTTTGCAGAAAGATCGTGTTCTCACAAACTTCCACTTCCAGATTTGCACCCTGTTGGTGTAGGTCGCACAGATTCTGGGATTAGTGTGACAGCAAAATCCAAATTAGAGAGAAGCTCCAAGACATCTTCTTTCCTACCCCTCCCTAGACCTGCTTGTATTCGAAGTAGGCCAGATCCTGCAGATTTAGATGGAGATTTGGTCACTGGTTCAGTCTTTGGTGAGTCCTCAAGTGATAGTGATGATCCCAATGATTCACGTCAACGTAGTCCTCGGGCAACTGACTATGACATTGGGGCTAGAACTGTGATAGGTTCTACTGAACCTAGTGAAACTCTCAAAGATCAGTCTCCTGCTGTCGTCCAAATAAATTTAAAAGAGGGCAAGAAAGCGGAAAGTCTTCCATTTCCTCATAAGAATTCTTCAATACCTAAACGGAGGCCTTTAAGCAGCAACGTAACAAATCTACAAGTTCCTCGCCATGGGGCCTTCTTTAGCGCACCAGATAGTTCTATGTCTAGTCCCTCTAGAAGTCCCATGAGGATATTTAGCACTGAGCAAGTCATGAACGCTGCTGTTTGGGCTGGAAAATCTCACCCAGATATCATTCTAGGTGGATCTGGCCCTTGTTCCAGTCCTGGTTCTGGTCACAATTCAGGGCACAACTCTATGGGAGGTGATACGGCGGGCCACTTCTTTTGGCAACAAAGTAGGGGTAGCCCCGAATATTCTCCTGTACCTAGTTCTAGAATGACTAGCCCCGGCCCTAGTTCCAGAATTCAAAGTGGTGCTGTCACACCTATTCATCCTAGAGCAGGAGCTCCACCTGCTGAGTCACAAACATGCTGGCCTGATGAGAAACAAACTCATCGTCTGCCTCTTCCTCCCATAGCAATCTCAAACTCTTCTCCATTTTCGCATTCAAATTCAGCAGTGACATCTCCTTCAGTGCCTAGGAGTCCAGGAAGGACAGAGACTCCAGCAAGCCCAGGTTCACGCTGGAAAAAGGGGAAGCTACTGGGTCGAGGCACATTTGGGCACGTATATGTGGGTTTTAATAGCGAAAGTGGAGAGATGTGTGCAATGAAAGAGGTCACGTTATTTTCTGATGATGCAAAGTCTAAGGAAAGTGCTAAACAATTAATGCAGGTACAAATTCCATTTTATGTGATACGTCCTAGTGCTTCCATTTTTCACCCTACAATATTTCTATGTTTTATTAAGAATTTTTCTATTTTATGGCAGGAAATTGCTTTACTGAGTCGTTTGAGGCATCCCAACATTGTGCAGTATTATGGTTCCGAAGCAGTGGGTGATAAATTCTATATATATCTGGAATACGTATCTGGTGGTTCTATTTATAAATTACTTCAAGAGTATGGGCAATTTGGGGAACTAGCAATTCGTAGCTATACTCAACAAATACTATCAGGACTTGCATATTTGCATGCTAAAGCTACAGTGCACAGGGATATTAAAGGAGCAAACATACTTGTTGACCCACATGGTCGTGTTAAATTGGCAGACTTTGGGATGGCGAAGCATATCACAGGCCAATCATGTCCATTGTCGTTTAAGGGCAGCCCTTACTGGATGGCACCTGAGGTCATAAAGAACTCAAATGGTTGCAACCTCGCCGTTGATGTTTGGAGTCTTGGATGTACTGTTCTGGAGATGGCTACTACAAAGCCACCCTGGAGCCAGTATGAAGGGGTTGCTGCGATGTTTAAGATTGGTAATAGCAAAGAACTCCCAGTAATTCCGGAGCATCTCTCAGATGATGGGAAGGATTTTGTGAGACTATGTCTGCAACGAAACCCACATCATCGACCTACAGCTGCTCAACTCTTGGAGCATCCTTTTGTCAAACATGCTGCACCTGTAGAGAGGCCTATTTTGAGCTCTGAACCTTCTGATACAACTCCTGGAGTTACAAACGGAGTGAAGATTTTGGGTATTGGTCAATCACGGACTACTTTTATGGACTCGGATAGTAGACTAGACAGTAGACTTGCAGTTCATTCTTCAAGAGTCTCAAAAGCTGTTCTTCATGCCAGTGAAATCAATATTCCCAGAAACATATCATGTCCTGTTTCACCAATCGGAAGCCCTCTTTTGCATTCACGATCTCCTCAACATCCCAGTGGAAGAATGTCTCCTTCACCTATTTCAAGTCCACGAACCACTTCGGGCTCGTCCACACCTTTGACAGGATGTGGTGGTGCAATTCCTTACAATCACCTGAAACAAGCTATATACTTGCAAGAGGGATTCGGAAGCATGCCAAAGTCCTTAAATAGTAGTCCGTATAGCAGCGGTATCTCCTTCCATGATTCAAATCCTGATATTTTTCGAGGGTTGCAGCCTGGGGCTCACATATTCTCTGAAATGATACCAGAAAACGATATCTTGGGAAAGCAGGTCGGACGCCCTGCTTATGGTGAGTTGTATGATGGCCAGCAGGTCTTGGCTGACAGAGTATCTCGACAGCTCCTGAGGGATCATGTTAAAACAAACCCTTCTCTTGATTTGAGTCCTACCGCTACATTGTCTGGCCGCATGAATGGTATCTGA 2799 44.41 MPSWWGKSSKDVKKKTSKESFIDSLHRKFKNSPEGKVNSRSGSSRKRGGDTISEKGSKSPISRSPSPSKEVARCQSFAERSCSHKLPLPDLHPVGVGRTDSGISVTAKSKLERSSKTSSFLPLPRPACIRSRPDPADLDGDLVTGSVFGESSSDSDDPNDSRQRSPRATDYDIGARTVIGSTEPSETLKDQSPAVVQINLKEGKKAESLPFPHKNSSIPKRRPLSSNVTNLQVPRHGAFFSAPDSSMSSPSRSPMRIFSTEQVMNAAVWAGKSHPDIILGGSGPCSSPGSGHNSGHNSMGGDTAGHFFWQQSRGSPEYSPVPSSRMTSPGPSSRIQSGAVTPIHPRAGAPPAESQTCWPDEKQTHRLPLPPIAISNSSPFSHSNSAVTSPSVPRSPGRTETPASPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLMQVQIPFYVIRPSASIFHPTIFLCFIKNFSILWQEIALLSRLRHPNIVQYYGSEAVGDKFYIYLEYVSGGSIYKLLQEYGQFGELAIRSYTQQILSGLAYLHAKATVHRDIKGANILVDPHGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDVWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPVIPEHLSDDGKDFVRLCLQRNPHHRPTAAQLLEHPFVKHAAPVERPILSSEPSDTTPGVTNGVKILGIGQSRTTFMDSDSRLDSRLAVHSSRVSKAVLHASEINIPRNISCPVSPIGSPLLHSRSPQHPSGRMSPSPISSPRTTSGSSTPLTGCGGAIPYNHLKQAIYLQEGFGSMPKSLNSSPYSSGISFHDSNPDIFRGLQPGAHIFSEMIPENDILGKQVGRPAYGELYDGQQVLADRVSRQLLRDHVKTNPSLDLSPTATLSGRMNGI 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20005153 20014634 + Lsi05G012140.1 Lsi05g01214 663706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01214 932 MobiDBLite consensus disorder prediction 280 411 - -
Lsi05g01214 932 MobiDBLite consensus disorder prediction 780 813 - -
Lsi05g01214 932 MobiDBLite consensus disorder prediction 1 175 - -
Lsi05g01214 932 MobiDBLite consensus disorder prediction 55 71 - -
Lsi05g01214 932 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 458 - -
Lsi05g01214 932 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524
Lsi05g01214 932 SUPERFAMILY Protein kinase-like (PK-like) 407 776 IPR011009 -
Lsi05g01214 932 MobiDBLite consensus disorder prediction 155 169 - -
Lsi05g01214 932 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 488 849 - -
Lsi05g01214 932 SMART serkin_6 409 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01214 932 CDD STKc_MEKK1_plant 408 697 - -
Lsi05g01214 932 Pfam Protein kinase domain 488 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01214 932 Gene3D Transferase(Phosphotransferase) domain 1 407 716 - -
Lsi05g01214 932 ProSiteProfiles Protein kinase domain profile. 409 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01214 932 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 488 849 - -
Lsi05g01214 932 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 458 - -
Lsi05g01214 932 MobiDBLite consensus disorder prediction 286 339 - -
Lsi05g01214 932 MobiDBLite consensus disorder prediction 776 813 - -
Lsi05g01214 932 MobiDBLite consensus disorder prediction 370 402 - -
Lsi05g01214 932 MobiDBLite consensus disorder prediction 102 121 - -
Lsi05g01214 932 MobiDBLite consensus disorder prediction 8 53 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00997 Lsi-Chr1:8231330 Lsi05g01214 Lsi-Chr5:20005153 2.92E-105 dispersed
Lsi05g01214 Lsi-Chr5:20005153 Lsi08g01440 Lsi-Chr8:22594837 1.57E-83 dispersed
Lsi01g01155 Lsi-Chr1:9726565 Lsi05g01214 Lsi-Chr5:20005153 6.82E-120 transposed
Lsi09g01048 Lsi-Chr9:15740890 Lsi05g01214 Lsi-Chr5:20005153 4.94E-20 transposed
Lsi09g01341 Lsi-Chr9:21376951 Lsi05g01214 Lsi-Chr5:20005153 9.09E-80 transposed
Lsi11g00542 Lsi-Chr11:5665789 Lsi05g01214 Lsi-Chr5:20005153 1.10E-74 transposed
Lsi05g01214 Lsi-Chr5:20005153 Lsi09g00476 Lsi-Chr9:5009804 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83655 PF00069 Pkinase 5.10E-60 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01214 K20717 - csv:101214961 1580.07