Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01215 ATGCCAGTTGCAAAACTCAAGACCTCTAACTATCCAGATGTGATGAAATCGGAGGAGGGAAATGATTCTCTAGACACTATTATTAGACAGGCAATCGGAAAAGAGCCTTTTCTTTCTTTCTCAAGAGCTGGTGAGAGTCCAGTCCAGTGGATTCAACTACTTCATGCTCTTGACCAACAAGAACTCCCAGGTTGGCCTTTGCTCTCTCCTTTAAAGGTTCAAATGCAGAAGTGTGAGAAGTGTGCCCGGGAATTTTGCTCAGTTATCAACTATAGAAGACATATACGTGTGCATCATAGGCTGAAAAAGCTTGATAAGGATTCTGCCAAGAGTAGGGATCTACTAGCAGCATTTTGGGACAAGCTAACCTGGGAAGAGACAAAGGAGGCTGTCTCATTTAAGAATGTTTCAATTGAGGCAAGTCATACCTCAGGAATACAAGGGTCAGCCGTAATCAAGAATCTGACGGCTATCATTGGGAAACCGGGATTTTCTGCCCTACCACATGTTTATTTGAGGGCAGGTTCTGCCCTTTTGGAGTTATTTGAAATTCTTGACAATGCAAGCGAAAAAACATTCCTATGTGGAACAGCTGTCTCAATGCAAAAATATATATTTGATGGAGAGGCTGTAAAGATTGGTCTTGAAACTAAAAACTTAGTTGCTTGCATGAGCTTCTTGTTGGAAGAGAAATTGGTCAAAACATGGCTCGCTGATAAGGATGCTGAAGCTTTAAGGTGTCAAAAGTTGCTGGTAGAGGAGGAAGAAGCTGCTCAAAGGAGACAAGCGGAGCTGTTGGAGAGAAAAAGGCAGAAGAAACTAAGGCAGAAAGAACAAAGGTCAAAGGAGCAAAAACTTGAAGAGAAGGCTGATATCGAAGGGAGTGTAGATGAAACAATTGAAGATGTGTTACTTGAAGAATCATCTAGCCCTCAGACTGAATGCCATTCAGAAAGGGACTCTCTGGGAATATTGCCTGATCATACTCCATCTTCTATTGAAACATCTCAACATTCTCTAACTGATGAAGATGAAGATTCTGAGTCTCATTCTGGGTTTCACAGTGGTTACCCTGAACATCTTCCTACTGATCACAATGGTGAACAGCAGAAAATACAAATGAATGGCCATAAGCATGTAATCTCCCAGTGGCAGGCATTGCCTAAGACACAAAGGGGACTTTCTAATGGTTTTCGTGCAGATCAGAATTATCAGGGACTCAAAAATGGAGATATGCGAAGACATGGGAACCATGTGCAATCAAGGGCTGTGCCCATTGTTAACGGGAAAAAAGTATGGAGCAGGAAGCCAAAGCCAGAAAGAGATGGAGATCGTTTTCAGGCCAGGATACAGGAAGAGACATCGGCCCAGGCAGAGGAAATCAAGAGCCACGAGGTTTTGATTGGTTCTATTTCAGTGGCATTAGGAAATTGCAATCAAGAGAGTAAAGATCCAGTCGGAACCCCAGATGATTGCCAGGATGGTCATCAAACGCCTAAGAAGATTAATAATCATTTGGAAAAATTCAATAAGCCGGATTCTATTCAAACTGCAACAAATCGGGTGATGGTTAAGCTTTGGAGGCCAGTTAGTCGTAATGGAACCAAATATGCAATGCCAGATCAAAGTGAAAATGGCGAGTCTGAAGCTGAAGTTATAACTGAAAAGCTAGAGGATCAGGCCCTGCTGAATGCATATTCTCCACGTTCCTTGGATGGTGACACTGGAGACTTTGGAAACAACTCTTTGATCCAGGAAGAACCTGCACAACCAGTTGGCTTGGAGTTCTCTAGTCGTGCTGCAAAAGCTTTCCTTGCACAAAGGTGGAAGGAGGCTATAACAGCCGACCATGTCAAATTGAATCTACCCTCAGATTCTGAATCTTCTGGATGTTTTCAAATGCAAAATGACACTGAAACCTCCTCTGCATTTCAGTCATCCAACTTTGACAGACGCAATACAATTTTGATTAACTTGGAGCCTCCCAAGTCCTCAACCAATGAAGCTGGCAAGACCACCAAGTTCAGGACAAAATTTGAAAAGGGTGCGAAGATAAAGTACATTCCCAAACTTCGAACTACTACTACTACCTAA 2094 42.6 MPVAKLKTSNYPDVMKSEEGNDSLDTIIRQAIGKEPFLSFSRAGESPVQWIQLLHALDQQELPGWPLLSPLKVQMQKCEKCAREFCSVINYRRHIRVHHRLKKLDKDSAKSRDLLAAFWDKLTWEETKEAVSFKNVSIEASHTSGIQGSAVIKNLTAIIGKPGFSALPHVYLRAGSALLELFEILDNASEKTFLCGTAVSMQKYIFDGEAVKIGLETKNLVACMSFLLEEKLVKTWLADKDAEALRCQKLLVEEEEAAQRRQAELLERKRQKKLRQKEQRSKEQKLEEKADIEGSVDETIEDVLLEESSSPQTECHSERDSLGILPDHTPSSIETSQHSLTDEDEDSESHSGFHSGYPEHLPTDHNGEQQKIQMNGHKHVISQWQALPKTQRGLSNGFRADQNYQGLKNGDMRRHGNHVQSRAVPIVNGKKVWSRKPKPERDGDRFQARIQEETSAQAEEIKSHEVLIGSISVALGNCNQESKDPVGTPDDCQDGHQTPKKINNHLEKFNKPDSIQTATNRVMVKLWRPVSRNGTKYAMPDQSENGESEAEVITEKLEDQALLNAYSPRSLDGDTGDFGNNSLIQEEPAQPVGLEFSSRAAKAFLAQRWKEAITADHVKLNLPSDSESSGCFQMQNDTETSSAFQSSNFDRRNTILINLEPPKSSTNEAGKTTKFRTKFEKGAKIKYIPKLRTTTTT 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20018140 20023900 - Lsi05G012150.1 Lsi05g01215 663707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01215 697 MobiDBLite consensus disorder prediction 479 499 - -
Lsi05g01215 697 MobiDBLite consensus disorder prediction 307 367 - -
Lsi05g01215 697 Coils Coil 263 289 - -
Lsi05g01215 697 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 694 - -
Lsi05g01215 697 MobiDBLite consensus disorder prediction 394 444 - -
Lsi05g01215 697 MobiDBLite consensus disorder prediction 269 293 - -
Lsi05g01215 697 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
Lsi05g01215 697 MobiDBLite consensus disorder prediction 338 353 - -
Lsi05g01215 697 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01215 - - - bhj:120084984 1261.51
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g717 . . . . . . . . Cmo16g00127 Cmo18g01282 . . . . . . Cpe14g00101 Bhi01g01291 . . . . . . . . . . . . . Cone1ag1169 . . . Lsi05g01215 . . Cme06g01016 . . . . . . . . . . . Cma16g00117 Cma18g01255 Car16g00104 Car18g01165 Cpe09g00080 . . . . . . . . . . . . . . . . Csa03g01726 Chy06g00956 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001162 3 11 1 3 3 1 4 0 0 2 1 1 3 2 1 2 1 4 4 1 2 2 2 2 2 1 2 5 3 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25355 None None None None Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01215 Lsi_Chr05 FPKM 0.986928 0.837153 7.573796 8.454175 26.539053 25.440214 26.66045 7.99937 7.157227 6.323079