Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01217 ATGAGTCCGCCCGCCGTCGAACCTCCGTTACTTCTTCTCTTTCTGCTTGCTGCAGCGTTACGGTGCCCGCTCGCCGGAGCGCGCCTTCTGGTGGAGATGACGGTGGTCCAAAACGCCTCTTCCATCGGAGCCTTTTGTTTGGACGGAAGCTTGCCGGCGTATCACCTGGACAGAGGATTCGGCGCCGGAGAGGGAAACTGGCTTCTACAGTTCGAGGGTGGTGGGTGGTGCAATGATGTAAAGTCTTGTTTGGATAGAGCGAATAGTCGAAGAGGTTCGACGCGTTTGATGACCAAATGGGAAGACTTTTCCGGTATTCTTAGCAACAATGCTTCTCTTAACCCAGATTTTTATAACTGGAACCGTGTGAAACTCAGGTACTGTGATGGAGCCTCATTTGCAGGAGATGCCTTGTTTGACAATGGGACATCACTGCTTTATTTCAAAGGGCAAAAGATATGGGAATCCATCCTTCTTGACCTTCTACCAAAAGGATTGGGGACAGCAAGGAAGGCTCTGCTTTCTGGTTGTTCAGCTGGAGGTTTAGCAACTTTTCTGCATTGTGAAAATTTCACAAAGTATTTGCCAAGGAATGCCAGCGTCAAATGCTTGAGTGATGCTGGATTTTTTCTTGACTTAAGAGACATAGGCTTAAACCATACAATGAGGAACTTTTATAAGGATCTTGTGGCTCTGCAGGTGTGGATGACAGGGGATGGAGCAAAATTTGAATGA 735 47.76 MSPPAVEPPLLLLFLLAAALRCPLAGARLLVEMTVVQNASSIGAFCLDGSLPAYHLDRGFGAGEGNWLLQFEGGGWCNDVKSCLDRANSRRGSTRLMTKWEDFSGILSNNASLNPDFYNWNRVKLRYCDGASFAGDALFDNGTSLLYFKGQKIWESILLDLLPKGLGTARKALLSGCSAGGLATFLHCENFTKYLPRNASVKCLSDAGFFLDLRDIGLNHTMRNFYKDLVALQVWMTGDGAKFE 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20072517 20084762 + Lsi05G012170.1 Lsi05g01217 663709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01217 244 PANTHER PECTIN ACETYLESTERASE 9 27 233 - -
Lsi05g01217 244 Pfam Pectinacetylesterase 28 235 IPR004963 GO:0016787
Lsi05g01217 244 PANTHER NOTUM-RELATED 27 233 IPR004963 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01217 K19882 NOTUM; O-palmitoleoyl-L-serine hydrolase [EC:3.1.1.98] - csv:101216160 423.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01217 Lsi-Chr5:20072517 Lsi06g00012 Lsi-Chr6:123755 7.47E-78 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g704 . . . . . . . . Cmo16g00130 Cmo18g01274 . . . . . . Cpe14g00105 Bhi01g01308 Tan01g0243 . . . Mch10g0149 . . . . . . . . Cone1ag1161 . . . Lsi05g01217 . . Cme06g01008 Blo07g00404 . . . . . . . . . . Cma16g00121 Cma18g01251 Car16g00111 Car18g01158 Cpe09g00086 . . . . . . . . Cla05g00888 Cam05g0975 Cec05g0979 Cco05g0978 Clacu05g0962 Cmu05g0919 Cre05g1004 . Csa03g01720 Chy06g00952 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi01g01824 . 6 284 Carbohydrate Esterase AT2G41530 81.4 9.4e-138 486.5
Lsi07g01030 . 203 576 Carbohydrate Esterase AT4G33220 66.4 9.2e-163 570.1
Lsi06g00089 . 955 1335 Carbohydrate Esterase AT4G33220 52.7 5.6e-120 427.9
Lsi02g02434 . 218 551 Carbohydrate Esterase AT4G33220 58.1 7.6e-117 417.5
Lsi09g00673 . 202 536 Carbohydrate Esterase AT4G33220 56.4 1.2e-109 393.7
Lsi05g01321 . 496 828 Carbohydrate Esterase AT4G33220 56.2 4.9e-108 388.3
Lsi01g00409 . 219 552 Carbohydrate Esterase AT4G33220 54.8 1.2e-106 383.6
Lsi02g02855 . 243 588 Carbohydrate Esterase AT4G33220 53.2 1.8e-105 379.8
Lsi05g01942 . 187 509 Carbohydrate Esterase AT4G33220 55.4 2.8e-103 372.5
Lsi09g00498 . 191 511 Carbohydrate Esterase AT4G33220 55.3 4.1e-102 368.6
Lsi07g00641 . 226 564 Carbohydrate Esterase AT4G33220 51.9 2.2e-100 362.8
Lsi07g00642 . 246 576 Carbohydrate Esterase AT4G33220 51.6 2.7e-98 355.9
Lsi09g00023 . 264 580 Carbohydrate Esterase AT4G33220 52.2 6.3e-95 344.7
Lsi05g00647 . 194 533 Carbohydrate Esterase AT4G33220 51.5 1.8e-94 343.2
Lsi04g00186 . 233 558 Carbohydrate Esterase AT4G33220 51.9 4.1e-94 342.0
Lsi04g02274 . 254 562 Carbohydrate Esterase AT4G33220 54.5 1.3e-92 337.0
Lsi05g01943 . 165 480 Carbohydrate Esterase AT4G33220 51.3 5.0e-92 335.1
Lsi02g00946 . 666 973 Carbohydrate Esterase AT4G33220 52.0 7.9e-90 327.8
Lsi02g02855 . 60 588 Carbohydrate Esterase AT1G53830 72.3 1.4e-220 762.7
Lsi07g00641 . 40 564 Carbohydrate Esterase AT1G53830 66.0 2.4e-196 682.2
Lsi02g02108 . 25 575 Carbohydrate Esterase AT1G53830 52.6 1.0e-154 543.9
Lsi02g02434 . 39 547 Carbohydrate Esterase AT1G53830 50.8 1.4e-135 480.3
Lsi01g00409 . 117 548 Carbohydrate Esterase AT1G53830 51.5 4.2e-116 415.6
Lsi05g01942 . 1 509 Carbohydrate Esterase AT2G45220 62.0 1.2e-183 639.8
Lsi05g01321 . 340 828 Carbohydrate Esterase AT2G45220 59.2 3.0e-166 582.0
Lsi09g00498 . 9 511 Carbohydrate Esterase AT2G45220 56.7 9.8e-162 567.0
Lsi05g00647 . 17 533 Carbohydrate Esterase AT2G45220 50.9 4.0e-139 491.9
Lsi02g02434 . 107 551 Carbohydrate Esterase AT2G45220 53.5 3.5e-119 425.6
Lsi05g01943 . 59 480 Carbohydrate Esterase AT2G45220 50.8 4.2e-104 375.6
Lsi07g00642 . 1 570 Carbohydrate Esterase AT1G53840 62.9 6.1e-184 641.0
Lsi10g00718 . 56 564 Carbohydrate Esterase AT5G09760 67.8 5.3e-204 707.6
Lsi10g00719 . 19 510 Carbohydrate Esterase AT5G09760 56.2 1.4e-161 566.6
Lsi05g01942 . 100 509 Carbohydrate Esterase AT3G59010 52.8 2.3e-113 406.4
Lsi05g01321 . 405 828 Carbohydrate Esterase AT3G59010 50.6 5.0e-108 388.7
Lsi06g00089 . 822 1337 Carbohydrate Esterase AT3G05620 62.0 8.8e-193 670.2
Lsi05g01321 . 431 828 Carbohydrate Esterase AT3G05620 52.6 3.8e-111 399.1
Lsi09g01450 CCT 1 575 Carbohydrate Esterase AT3G05610 54.3 1.7e-190 662.9
Lsi06g00089 . 1342 1923 Carbohydrate Esterase AT3G05610 54.1 1.7e-185 646.4
Lsi02g02435 . 35 541 Carbohydrate Esterase AT1G02810 60.7 1.8e-188 656.0
Lsi04g02274 . 15 563 Carbohydrate Esterase AT1G02810 56.6 5.9e-171 597.8
Lsi07g01030 . 215 576 Carbohydrate Esterase AT1G02810 53.8 1.1e-105 380.9
Lsi05g01942 . 208 509 Carbohydrate Esterase AT1G02810 59.7 1.4e-100 364.0
Lsi01g00409 . 242 552 Carbohydrate Esterase AT1G02810 55.4 8.7e-98 354.8
Lsi05g00099 . 45 577 Carbohydrate Esterase AT3G49220 69.6 1.8e-208 722.6
Lsi09g00023 . 49 581 Carbohydrate Esterase AT3G49220 60.1 6.5e-187 651.0
Lsi11g00122 . 1 594 Carbohydrate Esterase AT4G33230 51.8 2.5e-172 602.4
Lsi05g01321 . 341 828 Carbohydrate Esterase AT4G00190 50.7 4.6e-129 458.4
Lsi05g01942 . 33 509 Carbohydrate Esterase AT4G00190 50.1 1.7e-128 456.4
Lsi07g01030 . 97 576 Carbohydrate Esterase AT3G43270 64.5 2.2e-193 672.2
Lsi06g00089 . 839 1335 Carbohydrate Esterase AT3G43270 50.3 1.9e-139 493.0
Lsi02g02434 . 110 551 Carbohydrate Esterase AT3G43270 50.6 2.4e-126 449.5
Lsi07g00112 . 12 352 Carbohydrate Esterase AT5G61570 57.3 2.8e-107 385.6
Lsi09g00482 . 84 351 Carbohydrate Esterase AT5G61570 51.9 1.7e-80 296.6
Lsi05g01321 . 306 828 Carbohydrate Esterase AT5G51490 54.1 2.9e-164 575.5
Lsi05g00647 . 19 533 Carbohydrate Esterase AT5G51490 56.2 2.1e-162 569.3
Lsi09g00498 . 27 511 Carbohydrate Esterase AT5G51490 54.7 1.1e-155 547.0
Lsi10g00656 . 255 554 Carbohydrate Esterase AT5G51490 51.8 3.6e-82 302.8
Lsi05g00647 . 4 529 Carbohydrate Esterase AT5G51500 55.8 4.7e-162 568.2
Lsi05g01321 . 325 828 Carbohydrate Esterase AT5G51500 55.5 3.9e-161 565.1
Lsi09g00498 . 3 511 Carbohydrate Esterase AT5G51500 51.9 3.3e-152 535.4
Lsi05g00099 . 1 577 Carbohydrate Esterase AT5G53370 62.1 4.6e-206 714.5
Lsi09g00023 . 81 581 Carbohydrate Esterase AT5G53370 65.2 1.5e-193 672.9
Lsi02g01846 . 23 288 Carbohydrate Esterase AT5G55590 60.2 3.5e-99 358.6
Lsi07g00229 . 134 273 Carbohydrate Esterase AT5G55590 51.4 3.9e-42 169.1
Lsi07g00787 . 198 344 Carbohydrate Esterase AT5G55590 50.3 1.8e-39 160.2
Lsi02g02855 . 28 588 Carbohydrate Esterase AT3G14310 70.3 1.2e-227 786.2
Lsi07g00641 . 17 564 Carbohydrate Esterase AT3G14310 64.2 3.9e-202 701.4
Lsi02g02108 . 38 575 Carbohydrate Esterase AT3G14310 55.3 2.4e-159 559.3
Lsi01g00409 . 117 552 Carbohydrate Esterase AT3G14310 50.3 6.3e-120 428.3
Lsi09g00424 . 28 329 Carbohydrate Esterase AT5G47500 74.7 8.6e-144 506.9
Lsi10g00718 . 66 560 Carbohydrate Esterase AT5G64640 62.7 1.1e-185 646.7
Lsi10g00719 . 25 506 Carbohydrate Esterase AT5G64640 54.3 8.9e-154 540.8
Lsi10g00656 . 276 550 Carbohydrate Esterase AT5G04960 52.7 3.2e-81 299.7
Lsi02g02434 . 72 547 Carbohydrate Esterase AT4G02320 56.8 1.4e-152 536.6
Lsi02g02435 . 31 541 Carbohydrate Esterase AT4G02330 60.8 2.8e-181 632.1
Lsi04g02274 . 10 561 Carbohydrate Esterase AT4G02330 55.7 2.7e-168 589.0
Lsi10g00656 . 42 556 Carbohydrate Esterase AT4G02330 50.4 2.5e-137 486.1
Lsi02g02434 . 144 551 Carbohydrate Esterase AT4G02330 50.8 5.4e-116 415.2
Lsi07g01030 . 267 576 Carbohydrate Esterase AT4G02330 57.8 6.8e-103 371.7
Lsi01g00409 . 242 552 Carbohydrate Esterase AT4G02330 54.8 5.0e-98 355.5
Lsi05g01943 . 168 480 Carbohydrate Esterase AT4G02330 53.4 2.0e-91 333.6
Lsi05g00647 . 24 533 Carbohydrate Esterase AT3G47400 55.2 5.7e-161 564.7
Lsi05g01321 . 332 828 Carbohydrate Esterase AT3G47400 52.4 3.0e-154 542.3
Lsi01g00409 . 3 548 Carbohydrate Esterase AT1G11580 56.4 2.2e-165 579.3
Lsi05g00647 . 128 530 Carbohydrate Esterase AT1G11580 50.7 4.4e-102 369.0
Lsi01g00409 . 3 548 Carbohydrate Esterase AT1G11580 56.4 2.2e-165 579.3
Lsi05g00647 . 128 530 Carbohydrate Esterase AT1G11580 50.7 4.4e-102 369.0
Lsi01g00409 . 239 483 Carbohydrate Esterase AT1G11370 58.8 2.8e-81 298.9
Lsi02g02855 . 277 518 Carbohydrate Esterase AT1G11370 54.5 1.7e-73 273.1
Lsi09g00673 . 217 468 Carbohydrate Esterase AT1G11370 52.4 7.0e-72 267.7
Lsi07g01030 . 264 506 Carbohydrate Esterase AT1G11370 53.1 2.0e-71 266.2
Lsi02g02434 . 238 481 Carbohydrate Esterase AT1G11370 54.1 3.5e-71 265.4
Lsi11g00122 . 280 527 Carbohydrate Esterase AT1G11370 50.4 1.1e-69 260.4
Lsi07g00641 . 255 494 Carbohydrate Esterase AT1G11370 51.7 2.3e-67 252.7
Lsi09g00673 . 26 536 Carbohydrate Esterase AT1G23200 51.7 1.7e-143 506.5
Lsi02g02434 . 78 550 Carbohydrate Esterase AT4G02300 54.9 2.1e-143 506.1
Lsi04g00186 . 247 555 Carbohydrate Esterase AT4G02300 53.8 2.7e-90 329.7
Lsi04g02274 . 30 563 Carbohydrate Esterase AT2G47550 58.6 4.2e-174 608.2
Lsi02g02435 . 27 541 Carbohydrate Esterase AT2G47550 57.0 2.1e-173 605.9
Lsi10g00656 . 43 556 Carbohydrate Esterase AT2G47550 51.8 1.3e-143 506.9
Lsi05g01321 . 431 828 Carbohydrate Esterase AT2G47550 50.3 2.5e-110 396.4
Lsi05g00647 . 208 529 Carbohydrate Esterase AT2G47550 56.0 2.7e-96 349.7
Lsi05g01943 . 16 480 Carbohydrate Esterase AT3G60730 52.4 1.1e-144 510.4
Lsi04g02274 . 253 565 Carbohydrate Esterase AT3G60730 53.5 4.7e-95 345.5
Lsi10g00656 . 257 554 Carbohydrate Esterase AT3G60730 50.2 1.8e-86 317.0
Lsi04g00186 . 22 559 Carbohydrate Esterase AT3G10720 61.0 1.0e-192 670.2
Lsi11g00122 . 1 594 Carbohydrate Esterase AT2G26450 52.6 1.6e-166 583.2
Lsi07g00787 . 107 382 Carbohydrate Esterase AT1G05310 57.2 1.1e-96 350.5
Lsi03g01970 . 997 1286 Carbohydrate Esterase AT1G05310 56.2 3.2e-96 349.0
Lsi05g00397 . 63 263 Carbohydrate Esterase AT5G15860 63.9 1.7e-73 273.1
Lsi09g01082 . 52 307 Carbohydrate Esterase AT5G15860 54.9 3.8e-73 271.9
Lsi04g00304 . 110 354 Carbohydrate Esterase AT5G15860 57.1 8.8e-70 260.8
Lsi05g00397 . 70 362 Carbohydrate Esterase AT3G02410 63.4 8.9e-110 394.0
Lsi09g01082 . 65 460 Carbohydrate Esterase AT3G02410 52.2 3.2e-107 385.6
Lsi04g00304 . 93 465 Carbohydrate Esterase AT3G02410 54.8 4.7e-103 371.7
Lsi05g00489 . 1 472 Carbohydrate Esterase AT5G14310 70.1 2.7e-184 641.7
Lsi07g00985 . 62 379 Carbohydrate Esterase AT5G16080 54.8 1.6e-91 333.2
Lsi04g00275 . 22 349 Carbohydrate Esterase AT1G68620 51.2 1.5e-94 343.2
Lsi09g01082 . 77 488 Carbohydrate Esterase AT1G26120 56.2 1.1e-127 453.8
Lsi04g00304 . 52 518 Carbohydrate Esterase AT1G26120 54.0 2.1e-126 449.5
Lsi05g00397 . 77 415 Carbohydrate Esterase AT1G26120 60.1 8.4e-123 437.6
Lsi05g00489 . 1 472 Carbohydrate Esterase AT3G27320 71.3 7.4e-187 650.2
Lsi06g00168 . 12 356 Carbohydrate Esterase AT3G05120 77.7 7.1e-164 573.5
Lsi02g02332 . 117 447 Carbohydrate Esterase AT3G05120 70.9 1.7e-141 499.2
Lsi02g02332 . 107 447 Carbohydrate Esterase AT3G63010 73.4 1.6e-155 545.8
Lsi06g00168 . 12 352 Carbohydrate Esterase AT3G63010 71.9 4.6e-150 527.7
Lsi04g01587 . 120 720 Carbohydrate Esterase AT5G36210 60.4 6.2e-234 807.4
Lsi04g01591 . 46 679 Carbohydrate Esterase AT5G36210 60.3 8.9e-233 803.5
Lsi04g01102 . 16 289 Carbohydrate Esterase AT1G24793 53.9 3.8e-77 285.0
Lsi04g01102 . 16 361 Carbohydrate Esterase AT1G25054 55.9 1.4e-108 389.8
Lsi06g00012 . 47 412 Carbohydrate Esterase AT2G46930 67.5 3.7e-159 558.1
Lsi07g00767 . 51 421 Carbohydrate Esterase AT2G46930 53.1 5.2e-121 431.4
Lsi05g01217 . 29 233 Carbohydrate Esterase AT2G46930 54.1 2.9e-63 239.6
Lsi07g00767 . 56 400 Carbohydrate Esterase AT4G19410 61.7 3.1e-131 465.7
Lsi06g00012 . 49 393 Carbohydrate Esterase AT4G19410 50.4 4.4e-109 392.1
Lsi05g01217 . 31 232 Carbohydrate Esterase AT4G19410 51.5 5.8e-61 232.3
Lsi07g00768 . 1 146 Carbohydrate Esterase AT4G19410 62.6 3.2e-51 199.9
Lsi07g00767 . 38 424 Carbohydrate Esterase AT4G19420 62.1 8.3e-162 567.0
Lsi06g00012 . 47 411 Carbohydrate Esterase AT4G19420 53.2 4.3e-126 448.4
Lsi05g01217 . 29 232 Carbohydrate Esterase AT4G19420 53.4 1.8e-63 240.4
Lsi06g00012 . 20 294 Carbohydrate Esterase AT3G05910 72.3 3.0e-121 431.8
Lsi07g00767 . 56 303 Carbohydrate Esterase AT3G05910 56.5 1.6e-82 303.1
Lsi05g01217 . 29 233 Carbohydrate Esterase AT3G05910 53.7 2.4e-62 236.1
Lsi06g00012 . 35 390 Carbohydrate Esterase AT1G09550 59.8 2.4e-128 455.7
Lsi07g00767 . 51 400 Carbohydrate Esterase AT1G09550 50.6 2.9e-105 379.0
Lsi06g00012 . 115 412 Carbohydrate Esterase AT5G26670 76.8 1.6e-143 505.8
Lsi07g00767 . 122 421 Carbohydrate Esterase AT5G26670 54.3 1.0e-102 370.2
Lsi05g01217 . 97 233 Carbohydrate Esterase AT5G26670 55.5 1.0e-38 157.5
Lsi06g00012 . 20 294 Carbohydrate Esterase AT3G05910 72.3 3.0e-121 431.8
Lsi07g00767 . 56 303 Carbohydrate Esterase AT3G05910 56.5 1.6e-82 303.1
Lsi05g01217 . 29 233 Carbohydrate Esterase AT3G05910 53.7 2.4e-62 236.1
Lsi07g00767 . 67 383 Carbohydrate Esterase AT3G09410 50.6 1.9e-96 349.7
Lsi05g01217 . 23 233 Carbohydrate Esterase AT3G09410 50.7 4.4e-61 232.3
Lsi07g00767 . 56 415 Carbohydrate Esterase AT5G45280 61.8 4.4e-138 488.0
Lsi06g00012 . 49 410 Carbohydrate Esterase AT5G23870 51.6 7.8e-117 417.5
Lsi05g01217 . 31 233 Carbohydrate Esterase AT5G23870 73.9 5.1e-92 335.1
Lsi06g00012 . 48 411 Carbohydrate Esterase AT3G62060 72.1 2.4e-167 585.5
Lsi07g00767 . 42 421 Carbohydrate Esterase AT3G62060 52.6 1.5e-121 433.3
Lsi05g01217 . 30 233 Carbohydrate Esterase AT3G62060 53.9 9.0e-66 248.1
Lsi06g00012 . 48 412 Carbohydrate Esterase AT1G57590 72.6 1.0e-167 586.6
Lsi07g00767 . 48 420 Carbohydrate Esterase AT1G57590 52.5 3.2e-124 442.2
Lsi05g01217 . 30 233 Carbohydrate Esterase AT1G57590 54.4 1.7e-64 243.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004161 0 3 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 9 4 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01217 Lsi_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0