Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01217 ATGAGTCCGCCCGCCGTCGAACCTCCGTTACTTCTTCTCTTTCTGCTTGCTGCAGCGTTACGGTGCCCGCTCGCCGGAGCGCGCCTTCTGGTGGAGATGACGGTGGTCCAAAACGCCTCTTCCATCGGAGCCTTTTGTTTGGACGGAAGCTTGCCGGCGTATCACCTGGACAGAGGATTCGGCGCCGGAGAGGGAAACTGGCTTCTACAGTTCGAGGGTGGTGGGTGGTGCAATGATGTAAAGTCTTGTTTGGATAGAGCGAATAGTCGAAGAGGTTCGACGCGTTTGATGACCAAATGGGAAGACTTTTCCGGTATTCTTAGCAACAATGCTTCTCTTAACCCAGATTTTTATAACTGGAACCGTGTGAAACTCAGGTACTGTGATGGAGCCTCATTTGCAGGAGATGCCTTGTTTGACAATGGGACATCACTGCTTTATTTCAAAGGGCAAAAGATATGGGAATCCATCCTTCTTGACCTTCTACCAAAAGGATTGGGGACAGCAAGGAAGGCTCTGCTTTCTGGTTGTTCAGCTGGAGGTTTAGCAACTTTTCTGCATTGTGAAAATTTCACAAAGTATTTGCCAAGGAATGCCAGCGTCAAATGCTTGAGTGATGCTGGATTTTTTCTTGACTTAAGAGACATAGGCTTAAACCATACAATGAGGAACTTTTATAAGGATCTTGTGGCTCTGCAGGTGTGGATGACAGGGGATGGAGCAAAATTTGAATGA 735 47.76 MSPPAVEPPLLLLFLLAAALRCPLAGARLLVEMTVVQNASSIGAFCLDGSLPAYHLDRGFGAGEGNWLLQFEGGGWCNDVKSCLDRANSRRGSTRLMTKWEDFSGILSNNASLNPDFYNWNRVKLRYCDGASFAGDALFDNGTSLLYFKGQKIWESILLDLLPKGLGTARKALLSGCSAGGLATFLHCENFTKYLPRNASVKCLSDAGFFLDLRDIGLNHTMRNFYKDLVALQVWMTGDGAKFE 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20072517 20084762 + Lsi05G012170.1 Lsi05g01217 663709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01217 244 PANTHER PECTIN ACETYLESTERASE 9 27 233 - -
Lsi05g01217 244 Pfam Pectinacetylesterase 28 235 IPR004963 GO:0016787
Lsi05g01217 244 PANTHER NOTUM-RELATED 27 233 IPR004963 GO:0016787
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01217 Lsi-Chr5:20072517 Lsi06g00012 Lsi-Chr6:123755 7.47E-78 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01217 K19882 - csv:101216160 423.32