Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01219 ATGGAGTTGATTTGTGGGTTGATTATGTTAATCATGTGGGTGATTAGGGTTTCAATTATGGTTTTATTTGTGAAAGTGGTGGTTTCATGGTGGATTTTGCCTATTTTGGCTCATAAAAAATTGAAGAGAAATGGATTTGAAGGTCCTTCTCCTACTTTCCCTCTTGGAAACATTACAGAAATGAAGAAAATAATGAAAGCTGCTGCAGCCATTAATGGATCATCAACTACCTCCCTTGATGCTTCTTCAAATAATGTCTCCCATGATATTCATTCAACTATTTTCCCTCACTTTGCTCAATGGCAGAATTCTTATGGGAAGAAGTTTGTATATTGGTTGGGGACAGAGCCATTTTTGTACATAGCAGATCCACAGCTTGTGAAGAAGATATCTGAAGCTGTAATGGGGAAGAGTTGGGGGAAGCCAACTGTCTTCCGAAACGATCGAGAACCGATGTTCGGCGATGGCCTCGTCATGACCGAAGGCGACGACTGGATTCGTCATCGCCACATCCTCACTCCCGCCTTCAACCCCACCAATTTAAAGGCAATGACAAAGTTCATGGTGGAGTCCACCACAAAAATGGTAAAAGAGTGGAGAAGCCTGGTAAAGTCGGGGAAACCGGAAATCGACGTGGAGAGAGAAATCACGGCAACGGCCGGGGACATAATCGCAAAGGCAAGCTTCGGAATTTGGAGTGGCGGCGGCGGTGAAGAGGCATTGAATAACCTGAGAGCTCTTCAATTGACTCTGTTCTCGAACAGCAGCTACGTGGGGGTCCCATTCAGCAGTATATTTCTGTACCCTGCTCGAACCGTAGCCGCCAAGAGACTCGGTGCCCAAATCGACCGCCACTTCTTTTCCATCATATCTCACAGGAAACTCTCTTCCGATTCCGATTCCGATTTGCTGAGTCGGATGATTCAGAGTCAAAGCAACCAGAAGCAGGGCAGCGCCGCCCAGCTGACCCCTAGAGAAGTGGTGGACGAGTGTAAGACTTTCTTCTTCGGTGGCCATGAGACGACGGCGCTTGCCATCAGTTGGACGCTGCTGCTGCTGGCCACGCGCCCCGATTGGCAAAACATTTTACGAGAGGAGATTAAAGAAGTTATCGGAGATAAAGATATTGATTTCTCCATGCTTTCTTCACTCAAAAAGGTTTCTCCATATTTTCTCTTTTTCCTATTTGCTCTGCTCATATGA 1203 46.22 MELICGLIMLIMWVIRVSIMVLFVKVVVSWWILPILAHKKLKRNGFEGPSPTFPLGNITEMKKIMKAAAAINGSSTTSLDASSNNVSHDIHSTIFPHFAQWQNSYGKKFVYWLGTEPFLYIADPQLVKKISEAVMGKSWGKPTVFRNDREPMFGDGLVMTEGDDWIRHRHILTPAFNPTNLKAMTKFMVESTTKMVKEWRSLVKSGKPEIDVEREITATAGDIIAKASFGIWSGGGGEEALNNLRALQLTLFSNSSYVGVPFSSIFLYPARTVAAKRLGAQIDRHFFSIISHRKLSSDSDSDLLSRMIQSQSNQKQGSAAQLTPREVVDECKTFFFGGHETTALAISWTLLLLATRPDWQNILREEIKEVIGDKDIDFSMLSSLKKVSPYFLFFLFALLI 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20089302 20092696 - Lsi05G012190.1 Lsi05g01219 663711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01219 400 PANTHER CYTOCHROME P450 FAMILY 72 PROTEIN 14 387 - -
Lsi05g01219 400 Pfam Cytochrome P450 93 385 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01219 400 PRINTS E-class P450 group I signature 102 121 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01219 400 PRINTS E-class P450 group I signature 326 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01219 400 PRINTS E-class P450 group I signature 346 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01219 400 Gene3D Cytochrome P450 32 389 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi05g01219 400 PANTHER CYTOCHROME P450 FAMILY MEMBER 14 387 - -
Lsi05g01219 400 SUPERFAMILY Cytochrome P450 88 385 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01219 Lsi-Chr5:20089302 Lsi09g01110 Lsi-Chr9:17795573 2.94E-54 dispersed
Lsi05g01219 Lsi-Chr5:20089302 Lsi09g00466 Lsi-Chr9:4882351 6.92E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01219 - - csv:101220942 616.305