Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01224 ATGGTGAGCCAAAGGCAAAGACTTGCTCGGAAGAAGTACAAAGAAGAACACCCAGAACGGTTCCCGAAAGCAGAGCCAACGCCACCAAAAGACCCCGACAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCACATTCAAGCGCAAAAAGGAAGAATCGAATTCAACCAGAGACCCAAATAAACCCCACAAAAAGGGTTTTAAGAAACACCCTCTTAGAGTGCCTGGGATGAAGCCTGGAGAAAGCTGCTTCATCTGCAAAGCTAAAGACCACATTGCTAAGCTTTGCCCTGAAAAGGCTCAGTGGGAGAAGAACAAGGGAGTCTTATGTCCATCTCTGTTATTTGGCACTCACAGATATGCTTGCTTTGCCGAAGACGAGGGCACAGCCTCAAGAATTGCCCGGACAAAAATGAAGGGACTGTGGATAAGAAGTTATGCTATAATTGTGGTGAAACAGGACATTCACTGGCTAATTGTCCACAACCCCTTCAAGATGGGAGTCTTATGTCCATCTCTGTTATTTGGCACTCACAGATATGCTTGCTTTGCCGAAGACGAGGGCACAGCCTCAAGAATTGCCCGGACAAAAATGAAGGGACTGTGGATAAGAAGTTATGCTATAATTGTGGTGAAACAGGACATTCACTGGCTAATTGTCCACAACCCCTTCAAGATGCACTTGTATTTCAATTCTTCCAAACTAAGTGCCTTTCATATATTCCTATGGAATGAAGTGCTTTTGCGATTGCAATACAGATGCTCTGGAGCTTTTAAGGCTTTATTTATTTATTTTCTGAATTATATGTATCGGGGAACTAAATTCGCGAGTTGTTTTATTTGTAATGAAAGCGGACACTTAAGCAAGAACTGTCCAAGGAATACTCACGGGATCTACCCTAAGCTTCCATGTGATGACAATGGTCACACACCAGACTCCTGGCTTCGCTGTTTCCCCATAGTATCCTTGACCCTTGTATCATACAACTTTAAGAATTTCCTTGGTGGTTGTTGTAAAACTTGTGGGCAAGTCACACATTTAGCTAAGGATTGTCCAAACAAAGGCACCCAAGTGTTTGATAGGGCCGGTGTATCTGCATCTGGCTATGTGGAAATGCCGAGACGACCAGAGACGAAGCTCATCAGCGGTGATGATCTCGAGGATGACTTCATGATCGATGAAGATCATTTACAGATCAAAAATGCAAAAATAGGAAAGAAAAAGGGTCCCAAAGTTGTGAGGTTCATGGATTGA 1251 43.41 MVSQRQRLARKKYKEEHPERFPKAEPTPPKDPDKKKKKKKKKSTFKRKKEESNSTRDPNKPHKKGFKKHPLRVPGMKPGESCFICKAKDHIAKLCPEKAQWEKNKGVLCPSLLFGTHRYACFAEDEGTASRIARTKMKGLWIRSYAIIVVKQDIHWLIVHNPFKMGVLCPSLLFGTHRYACFAEDEGTASRIARTKMKGLWIRSYAIIVVKQDIHWLIVHNPFKMHLYFNSSKLSAFHIFLWNEVLLRLQYRCSGAFKALFIYFLNYMYRGTKFASCFICNESGHLSKNCPRNTHGIYPKLPCDDNGHTPDSWLRCFPIVSLTLVSYNFKNFLGGCCKTCGQVTHLAKDCPNKGTQVFDRAGVSASGYVEMPRRPETKLISGDDLEDDFMIDEDHLQIKNAKIGKKKGPKVVRFMD 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20140154 20144950 + Lsi05G012240.1 Lsi05g01224 663716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01224 416 MobiDBLite consensus disorder prediction 1 73 - -
Lsi05g01224 416 PANTHER OS04G0555800 PROTEIN 334 415 - -
Lsi05g01224 416 PANTHER OS04G0555800 PROTEIN 270 307 - -
Lsi05g01224 416 PANTHER OS04G0555800 PROTEIN 1 108 - -
Lsi05g01224 416 Pfam Zinc knuckle 277 291 IPR001878 GO:0003676|GO:0008270
Lsi05g01224 416 ProSiteProfiles Zinc finger CCHC-type profile. 337 352 IPR001878 GO:0003676|GO:0008270
Lsi05g01224 416 MobiDBLite consensus disorder prediction 8 32 - -
Lsi05g01224 416 SMART c2hcfinal6 81 97 IPR001878 GO:0003676|GO:0008270
Lsi05g01224 416 SMART c2hcfinal6 276 292 IPR001878 GO:0003676|GO:0008270
Lsi05g01224 416 SMART c2hcfinal6 336 352 IPR001878 GO:0003676|GO:0008270
Lsi05g01224 416 ProSiteProfiles Zinc finger CCHC-type profile. 277 292 IPR001878 GO:0003676|GO:0008270
Lsi05g01224 416 SUPERFAMILY Retrovirus zinc finger-like domains 275 296 IPR036875 GO:0003676|GO:0008270
Lsi05g01224 416 Gene3D - 269 356 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01224 - - - cpep:111810346 176.407
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g677 . . Bda05g00075 . Bpe03g00286 . . . . Cmo18g01271 . . . . Sed01g3584 . Cpe14g00107 Bhi01g01319 Tan01g0250 Cmetu06g0041 . Hepe07g0157 Mch10g0153 . . . . . . . . Cone1ag1157 Cone5ag0868 . . Lsi05g01224 . . Cme06g01001 Blo07g00410 . . . . . . . . . . Cma16g00124 Cma18g01248 Car16g00113 Car18g01155 Cpe09g00089 . . . . . . . . . . . . . . . . Csa03g01713 Chy06g00948 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010880 1 1 1 0 1 1 2 1 1 0 0 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01224 Lsi_Chr05 FPKM 0.452381 0.904825 0.0 0.230794 0.240051 0.0 0.0 0.0 0.0 0.0