Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01225 GCGAACTCTGCATCTGGAATGGCTGTGAGGGATGAATGCAAGCTGAAATTTTTGGAGTTAAAAAACAAGAGGAACTATCGATTCATTATATTCAAGATTGAGAATCAAGAAGTTGTTGTGGAGAAACTTGGATGCCCGGAAGAGACTTATGAAGATTTTGCTGCTGCTATTCCTGCTGATGAGTCACCTGACACATCAAAAGTGAGAAATAAGATGGTTTATGCAAGCTCCAAGGACAGATTCAAGAGGGAATTGGATGGAATTCAGGTGGAATTGCAAGCCACTGATCCTAGCGAAATGAGCTTTGACATAATCAAAGCTCGAGCTTTTTAA 333 40.54 ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADESPDTSKVRNKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF 110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20146208 20147191 + Lsi05G012250.1 Lsi05g01225 663717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01225 110 PANTHER COFILIN-RELATED 1 61 IPR017904 GO:0015629|GO:0030042
Lsi05g01225 110 SUPERFAMILY Actin depolymerizing proteins 2 108 - -
Lsi05g01225 110 ProSiteProfiles ADF-H domain profile. 1 110 IPR002108 GO:0003779
Lsi05g01225 110 Gene3D Severin 62 109 IPR029006 -
Lsi05g01225 110 SMART adf_2 11 110 IPR002108 GO:0003779
Lsi05g01225 110 CDD ADF_cofilin_like 5 109 IPR017904 GO:0015629|GO:0030042
Lsi05g01225 110 Pfam Cofilin/tropomyosin-type actin-binding protein 62 107 IPR002108 GO:0003779
Lsi05g01225 110 Pfam Cofilin/tropomyosin-type actin-binding protein 13 60 IPR002108 GO:0003779
Lsi05g01225 110 Gene3D Severin 1 61 IPR029006 -
Lsi05g01225 110 PANTHER COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN 1 61 - -
Lsi05g01225 110 PANTHER COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN 62 110 - -
Lsi05g01225 110 PANTHER COFILIN-RELATED 62 110 IPR017904 GO:0015629|GO:0030042
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01225 K05765 CFL; cofilin - csv:116402770 192.971
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi05g01225 Lsi09g00095 CCT
Lsi05g01225 Lsi09g00095 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01225 Lsi-Chr5:20146208 Lsi10g00487 Lsi-Chr10:7006517 9.13E-31 dispersed
Lsi05g01225 Lsi-Chr5:20146208 Lsi05g02031 Lsi-Chr5:27298517 2.54E-56 wgd
Lsi05g01225 Lsi-Chr5:20146208 Lsi09g00464 Lsi-Chr9:4860213 2.73E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g676 . . . . Bpe03g00111 . . Bma14g02084 . . Cma02g01068 Cma15g01098 Car02g00811 Car15g01009 . Cpe05g00651 . . . . . . . . Cla01g00433 Cam01g0456 Cec01g0445 Cco01g0467 Clacu01g0455 Cmu01g0434 Cre09g2078 . Cone5ag0867 . . Lsi05g01225 . . . . Blo09g00112 . . . . . . . Cmo02g01086 Cmo15g01156 Cma16g00125 . . Car18g01154 Cpe09g00090 Cpe13g00253 Bhi12g00511 . . . Hepe06g0702 . . Cla05g00883 Cam05g0971 Cec05g0975 Cco05g0975 Clacu05g0958 Cmu05g0915 Cre05g0999 Lsi09g00095 Csa03g01712 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015387 1 0 0 0 0 0 0 1 1 0 1 1 0 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 8
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01225 Lsi_Chr05 FPKM 1.113948 1.22855 0.398007 0.32707 0.895748 1.243039 0.871235 0.401341 0.388677 0.391949