Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01226 ATGTCGTTTTCTGGTGTCACAACAGCGTATAATTTATCTGGAAATGCAATAAAAGGAAGTGAGAAATCCCAATCTTACCCCTACAACAGTTCCGAAACCCCAGAAAAGCCAAATCACCGACGACAAGTCGAATTCACACTCGATTGTACGTCCTTCAATAACATCACAGGAGGAGCCTGCCCTGCCAACTACCCGACCAATTGGACTGTGGAGGAAAATCCGGACCGTCCATCGCCAGCCACGTGCCCAGATTACTTCCGTTGGATCCACGAGGACCTGAGGCCGTGGGCCTGGACGGGGATCACGAGGGCCACGCTGGAGGCTGGGAGACGGACGGCGAATTTCCGGCTGGTGATTCTGAATGGGAAGGCTTACGTGGAGACATATAAAAAGTCGTTTCAAACGAGAGATACTTTTACGGTGTGGGGGATCCTACAGTTGTTACGGAGGTACCCTGGAAAAGTGCCTGATTTGGATCTGATGTTTGATTGCGTTGACTGGCCTGTGATTTTGACCAGCCATTTTAGTGGGCCTAATGGGCCGACCCCACCTCCTTTGTTTCGTTATTGTGGAGATGATGCCACGCTGGACATTGTTTTTCCTGACTGGTCCTTCTGGGGATGGCCAGAGATCAATATAAAGCCATGGGAGGCATTGTTGAAGGATCTAAAAGAAGGGAATAAAAGGATCCCATGGAAGAGTAGAGAGCCTTATGCATACTGGAAGGGAAATCCAGAGGTAGCCGACACCCGAAAAGATCTACTCAAATGCAATGTCTCTGACCAACAAGACTGGAACGCTCGTGTATTCGCTCAGGATTGGGTGAAAGAATCCCAGCAGGGATACAAGCAATCAGATCTTGCAAACCAATGTCTTCATAGATATAAAATCTATATAGAAGGATCAGCTTGGTCTGTTAGTGAAAAGTACATTCTTGCTTGCGATTCCGTTACCTTAATCGTAAAGCCCCATTACTACGACTTCTTCACGAGAGGTTTGATGCCGGTGCACCACTATTGGCCCATAAAGGATGACGACAAGTGCAAGTCTATAAAATTTGCAGTTGATTGGGGCAACAGCCATAAGCAAAAGGCGCAGGCCATTGGTAAAGCAGCTAGCAGTTTCATCCAAGAGGACCTAAAGATAGACTATGTCTATGACTACATGTTTCATCTTCTGAGTGAATATTCAAAACTCCTTACTTTCAAGCCAACAATACCACCCAATGCGATCGAGCTTTGTTCCGAGGCCATGGCTTGTCCAGCTGAAGGGCTAACCAAGAAATTCATGATAGAGTCATTAGTGAAGAGACCTGCAGATTCGAGCCCGTGCACAATGCCACCCCCATATGATCCTGCATCGCTTCTTTTTGTTCTTAGTAGAAAAGAGAATTCAATCAAACAAGTAGAAAAATGGGAGACAAGTTTCTGGGATACTCAAAGTAAGCAGCCATAG 1455 46.46 MSFSGVTTAYNLSGNAIKGSEKSQSYPYNSSETPEKPNHRRQVEFTLDCTSFNNITGGACPANYPTNWTVEENPDRPSPATCPDYFRWIHEDLRPWAWTGITRATLEAGRRTANFRLVILNGKAYVETYKKSFQTRDTFTVWGILQLLRRYPGKVPDLDLMFDCVDWPVILTSHFSGPNGPTPPPLFRYCGDDATLDIVFPDWSFWGWPEINIKPWEALLKDLKEGNKRIPWKSREPYAYWKGNPEVADTRKDLLKCNVSDQQDWNARVFAQDWVKESQQGYKQSDLANQCLHRYKIYIEGSAWSVSEKYILACDSVTLIVKPHYYDFFTRGLMPVHHYWPIKDDDKCKSIKFAVDWGNSHKQKAQAIGKAASSFIQEDLKIDYVYDYMFHLLSEYSKLLTFKPTIPPNAIELCSEAMACPAEGLTKKFMIESLVKRPADSSPCTMPPPYDPASLLFVLSRKENSIKQVEKWETSFWDTQSKQP 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20146334 20152611 - Lsi05G012260.1 Lsi05g01226 663718

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01226 484 PANTHER MOTIF-CONTAINING PROTEIN 1, PUTATIVE-RELATED 28 482 - -
Lsi05g01226 484 PANTHER KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED 28 482 - -
Lsi05g01226 484 SMART cap10 154 403 IPR006598 -
Lsi05g01226 484 MobiDBLite consensus disorder prediction 20 40 - -
Lsi05g01226 484 Pfam Glycosyl transferase family 90 80 473 IPR006598 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01226 - - - bhj:120086310 947.577
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01226 Lsi-Chr5:20146334 Lsi05g01231 Lsi-Chr5:20183313 0 dispersed
Lsi05g01226 Lsi-Chr5:20146334 Lsi05g01229 Lsi-Chr5:20172830 2.06E-170 proximal
Lsi02g01283 Lsi-Chr2:17166953 Lsi05g01226 Lsi-Chr5:20146334 4.13E-137 transposed
Lsi05g01226 Lsi-Chr5:20146334 Lsi09g00276 Lsi-Chr9:2891718 4.20E-40 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g671 . . . . Bpe03g00287 . Bma10g01223 . Cmo16g00132 Cmo18g01270 . . . . Sed13g0125 . . Bhi01g01320 Tan01g0251 Cmetu09g0720 . Hepe07g0158 Mch10g0154 . . . . . . . . . . . Cone15ag0089 Lsi05g01226 . . . Blo07g00411 Blo09g00111 . . . . . . . . . Cma16g00126 Cma18g01247 . . . . Bhi12g00232 . . Lac11g2111 Hepe06g1560 . Lcy12g1668 . . . . . . . . . Chy06g00947 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000256 4 8 4 4 3 4 1 4 5 4 4 4 6 5 5 5 4 11 3 4 5 4 5 6 6 7 5 8 8 9 155
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01226 Lsi_Chr05 FPKM 5.464066 5.797617 7.446459 7.03707 5.336922 3.899467 5.087018 6.686386 7.003084 7.372729