Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01238 ATGGGAGTAAAGAACTTCTGGGATATCTTAGAATCGTGCAAGAAAACTCTCCCACTTCACCGTCTTCAGAATAAGAGATTATGCATCGATCTCTCATGTTGGATAGTTCAGCTTCAAAATGTTGCTCAAAATGATGCAAATCCCCAGCAATTATGCTCACTGAAAAGAAACAAGGGTTCTGAGTTCTCTTTAATGATAAAAGAGGCAAAAGCCTTAGGACTGGCTCTTGGTATCCCCTGTCTAGATGGGATGGATGCTTCACTTCAGATTCAGATGCTTTCCTTTTTGGTGCTAGGACAGTATATAGGGATATCTGCCTTGGTGAGTGTCGTACTAGAGCGTGCTCAGTTTCTATTGAGCTGGTTTAGATTTCAAAATAATGTACTCACTAGGCTGTTTTTTGTTGTTAAATTAGGAGATAGCGGTTATGTAGTTTGTTATGAAATGGATGACATCGAAAGACAATTAGGATTCGGGAGGAACTCAATGATTACGTTGGCTCTACTTCTTGGCAGTGATTACTCGCAAGGCGTTTATGGCATGGGTCGTGAATCTGCTTGTCAGATTGTTAAAGCAGTAGGAGACAGTGATGTCCTTCAAAAAATTGCATCCGAGGGACTGTCTTTCGCTAAGAAGGGGAAGAATTCCAAGAAGCAAGGACTTCCTAAGTCTGGGCATGGACAGTATATGCATGCATGTGATCAGTTTTCAGAAGTCATTGATGCCTATTTGAAACCCAAATGCCACTCAGCTGATTCTGAAGCTGTGACTAGGTGA 777 41.57 MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNVAQNDANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGMDASLQIQMLSFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDSGYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPKSGHGQYMHACDQFSEVIDAYLKPKCHSADSEAVTR 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20223460 20225994 - Lsi05G012380.1 Lsi05g01238 663730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01238 258 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 139 258 IPR006084 -
Lsi05g01238 258 Pfam XPG N-terminal domain 1 54 IPR006085 GO:0004518
Lsi05g01238 258 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 139 258 - -
Lsi05g01238 258 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 43 - -
Lsi05g01238 258 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 42 84 - -
Lsi05g01238 258 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 42 84 IPR006084 -
Lsi05g01238 258 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Lsi05g01238 258 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 163 178 IPR006084 -
Lsi05g01238 258 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 43 IPR006084 -
Lsi05g01238 258 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 158 250 IPR036279 -
Lsi05g01238 258 Gene3D - 1 93 - -
Lsi05g01238 258 Gene3D - 159 219 - -
Lsi05g01238 258 SUPERFAMILY PIN domain-like 3 173 IPR029060 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01238 K15338 GEN1, GEN; flap endonuclease GEN [EC:3.1.-.-] - csv:101214962 316.235
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01238 Lsi-Chr5:20223460 Lsi09g01931 Lsi-Chr9:28125515 1.04E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g654 . . Bda05g00064 . Bpe03g00291 . Bma10g01219 . . Cmo18g01265 . . . . Sed06g0576 . . Bhi01g01332 Tan01g0264 Cmetu11g0868 . Hepe07g0167 Mch10g0164 . . . . . . . . . . Cone14ag0094 Cone15ag0100 Lsi05g01238 . . Cme06g00987 Blo07g00415 . . . . . . . . . . . Cma18g01242 . Car18g01147 Cpe09g00095 . . . . . . . . Cla05g00870 Cam05g0959 Cec05g0963 Cco05g0963 Clacu05g0945 Cmu05g0902 Cre05g0986 . Csa03g01701 Chy06g00937 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008050 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01238 Lsi_Chr05 FPKM 1.503623 1.283473 0.677806 0.468619 4.694463 5.023413 2.650526 0.261734 0.266429 0.572154