Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01244 ATGTTGCTGCAAATTCTTTCAATATACAGGAATTTGCTTCTTCATGTTGGTCTGTCTCTCTCGCTTTCTGTTGTCATCATTTTCTTCAAAATCCCAACACTTTTCCTTCATGGCATATTCACCTACATCCACCCTGATAACACCAACAGCGGCGTACGAGCCGCGATTAGAAGACCTGACGGCTCTAGCTCCGGTTCTGGACTAGAGGGTTACCGAAACTTGTCCTCAACTGGTGCTGCTGAGATCAGGAAAAGAACAAAGTCGAAGGACAAGGTTGAGTTTGATGAAAGCAAGGCGCAGATCTTCAGGTTAAAGCTAGATGAGAATCATCTGCAAACGCGGATCTATTTCAAAGAATACAGAGATGGTTTCACTTTTTCATTTGTGGGTATTTCTTGTTTACTGCTGCAAATTTTCTTGGGTGCATCCAAAAATTCTGGGGTTTGGGGAAATGGGATTTTTGTTCCTCTTCTGTTTGCGATCTTTGCTGGATGTAAGCTATTTGTATCTCTCACAAAGGTTGCTATGGAGAAATCTGCGTCCAGGACGTTGGATAGGCAATTGAGTTTACTCTTTGGAGTTTCTGGGTTTCTTTTTGGACTTCTAACCTGTTCTGCTTTGACCCCTCTTATATTGGATTTTGATCTTGGTGAAATTGGTGGTTTGGGGGCTTGTTTCGTTTCTATCTTAATGGGCTGTTGTGCTGGGTTTTTGTTTATACCTGCAACCAAAATCGCTCGATCATTTTGGCTTGGAACCGATCAAATTAGATGCAATTTGGATATGGTTTATTGTGGATGGTTTTCTCGGATGGTTTTGTATTCAAGTCAGTTTGCCATGGCTTTCACCACCTTGCTTTGGGTTAACCCATTAGCTGAAATTTTCATTAACAAGAACATCGGCGAAGGTACAATTGAACATATGTCTAGTGAAATCCGAAATGCTGACAGATTGGTCGGAAGTATAGGATTCTCAAAGGCAGATTTTGTCAAGCTTAGGCTCTGGTGTTTGTCACTGTCTGGTTTCTTGCAAATCATTGCAGTAAGGCAGAACTTGCAAATGTATCTGAACGAAGCTTTGTTATCTTGGTATCAAAGATTGCATGCTGGGAAAGTTCCTGACTTGGATTTCAGTAGAGCAAAGGTTTTTCTGCACAATCACTACTTATGTGTGTCTGCTTTGCAGTTTTTTGCTCCACCAGCCTTAGTTTTGCTCTTTGTTGGGTTATCTCAAATTGGTATCAACTCTTTGGAAAATACCAATTTGCACCTTCTGATCGCATGGAAGCAAAAAAATCTTGTCTTCCTCCTCTTCCACGAACCTTCTAGAATTGAAATTCCAGTGCCGTACCTGGAAAATTCTCAGAACTATTCTTCTAAAATTGTCATATCCAAGCTTTCTTTAGGGTGTGGGAGTTGCGTCCGATCATTCCGGGATCTGATTTGGTTGATTCTTGTGGCTCCTCTCATGGAGGAGCCGAGCGCCAAGCCAACGCCTACTGCAGGCGATTCACAGAGATCTGTGCCCACTCCTTTCTTGACCAAAACTTATCAGCTCGTTGACGACGAGACAATCGACCATGTCATTTCATGGAACGACGACGGATCTACCTTCATCGTCTGGAACACCATGGCTTTCGCCAGAGATTTGCTCCCCAAGTATTTCAAGCACAATAACTTCACCAGCTTTCTCCGCCAGCTCAATACTTATGGATTTAGAAAGGTTGTAGCGGACCGTTGGGAGTTCGCGAACGAGTGCTTTCGCAAGGGCAAGAAACAGCTTCTTTGTGAGATTCAGCGTAGGAAATTGGCCGCTCCGGTGCCGTCCACTGCTTCTAACGCGGTTGTGGTGACAACCGTTGGTGTTGCGGAGACGCCGTCTGCGCAACTACTAACATTGACGGGGAATTCTTCCGGTGAAGAACAAGTGATTTCGTCTGATGAGACTCCGACGAGAGCTCTTGCAGAGTTGATCGATGAGAACGATCGGCTGAGACAAGAGAAAGTTCAGCTTACGGAACAATTGGTTGAGGTGAAATCTCTGTGCAACAATATCTTCTCGTTGATGTCGAGCTTCGTTGAAAGTCAATTTAAGAGCAGTTTCAAAGTGAGAGAGAGCGTTTTAACATCCGCAAAATCGCTCGATCTTTTCCCAGTGAAGCGGCCTTCCGGCGAAGACGAGGCGATGGACGCCAAGGAGGAGGAGACGAATCACATCGGCGCGAAGCGACCGAGGGAATATAGGGAGGGGGCGACGGAGACGGCGGAGGACGATACTACTTTGCGGCTTCAACCACCGGATAGATCGGAAGTCAAATCAGAGCAGATAAATTGTCAAAATAAAGTTGATGAACAGAAAACGTGGCATAATCAGGTCCACTGA 2382 44.71 MLLQILSIYRNLLLHVGLSLSLSVVIIFFKIPTLFLHGIFTYIHPDNTNSGVRAAIRRPDGSSSGSGLEGYRNLSSTGAAEIRKRTKSKDKVEFDESKAQIFRLKLDENHLQTRIYFKEYRDGFTFSFVGISCLLLQIFLGASKNSGVWGNGIFVPLLFAIFAGCKLFVSLTKVAMEKSASRTLDRQLSLLFGVSGFLFGLLTCSALTPLILDFDLGEIGGLGACFVSILMGCCAGFLFIPATKIARSFWLGTDQIRCNLDMVYCGWFSRMVLYSSQFAMAFTTLLWVNPLAEIFINKNIGEGTIEHMSSEIRNADRLVGSIGFSKADFVKLRLWCLSLSGFLQIIAVRQNLQMYLNEALLSWYQRLHAGKVPDLDFSRAKVFLHNHYLCVSALQFFAPPALVLLFVGLSQIGINSLENTNLHLLIAWKQKNLVFLLFHEPSRIEIPVPYLENSQNYSSKIVISKLSLGCGSCVRSFRDLIWLILVAPLMEEPSAKPTPTAGDSQRSVPTPFLTKTYQLVDDETIDHVISWNDDGSTFIVWNTMAFARDLLPKYFKHNNFTSFLRQLNTYGFRKVVADRWEFANECFRKGKKQLLCEIQRRKLAAPVPSTASNAVVVTTVGVAETPSAQLLTLTGNSSGEEQVISSDETPTRALAELIDENDRLRQEKVQLTEQLVEVKSLCNNIFSLMSSFVESQFKSSFKVRESVLTSAKSLDLFPVKRPSGEDEAMDAKEEETNHIGAKRPREYREGATETAEDDTTLRLQPPDRSEVKSEQINCQNKVDEQKTWHNQVH 793
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20250709 20256496 + Lsi05G012440.1 Lsi05g01244 663736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01244 793 SMART hsfneu3 508 601 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi05g01244 793 MobiDBLite consensus disorder prediction 770 785 - -
Lsi05g01244 793 PANTHER RE42071P 9 420 - -
Lsi05g01244 793 Gene3D - 504 602 IPR036388 -
Lsi05g01244 793 Coils Coil 654 681 - -
Lsi05g01244 793 SUPERFAMILY Winged helix DNA-binding domain 509 601 IPR036390 -
Lsi05g01244 793 MobiDBLite consensus disorder prediction 721 769 - -
Lsi05g01244 793 Pfam HSF-type DNA-binding 512 601 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi05g01244 793 PANTHER RE42071P 9 420 IPR019395 -
Lsi05g01244 793 Pfam Predicted transmembrane protein 161AB 226 407 IPR019395 -
Lsi05g01244 793 MobiDBLite consensus disorder prediction 721 793 - -
Lsi05g01244 793 ProSitePatterns HSF-type DNA-binding domain signature. 551 575 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi05g01244 793 PRINTS Heat shock factor (HSF) domain signature 512 535 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi05g01244 793 PRINTS Heat shock factor (HSF) domain signature 550 562 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lsi05g01244 793 PRINTS Heat shock factor (HSF) domain signature 563 575 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01244 - - - csv:101217739 764.992
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01244 Lsi-Chr5:20250709 Lsi06g00597 Lsi-Chr6:8182173 2.37E-43 dispersed
Lsi05g01244 Lsi-Chr5:20250709 Lsi09g00296 Lsi-Chr9:3057340 2.06E-69 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g621 . . . Bda07g01857 . . . . . Cmo18g01260 . . . . . . . Bhi01g01342 . . . Hepe07g0172 . . . . . . . . . . . . . Lsi05g01244 . . Cme06g00982 . . . . . . . . . . . . Cma18g01238 . Car18g01141 . . . . . . . . . Cla05g00865 Cam05g0952 Cec05g0957 Cco05g0957 Clacu05g0939 Cmu05g0897 Cre05g0981 . Csa03g01696 Chy06g00931 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003583 2 2 0 1 1 1 3 1 1 2 1 1 3 2 2 4 1 2 2 1 2 2 2 2 1 1 1 1 1 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25356 PF10268 Tmemb_161AB 2.40E-12 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01244 Lsi_Chr05 FPKM 15.762004 19.182306 18.176285 17.622644 26.623194 28.331207 27.418081 24.021055 21.461916 21.879534