Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01245 ATGGTTTTTCATATGGGTATGGAGTTGAAACGCTTCTTTTTCATTTTCATTGTCTGCTTCGAGCTCTGCATTTTGAGCTCCAATGGCGCTACAGTCCAGAATGAGATTATTATCGAGAGAGAAAGCTTGATTTCTTTCAAAGCTTCGTTGGAGAACTCCGAAATTCTGCCATGGAACTCATCGGCTCCTCACTGCTTTTGGGCTGGAGTTTCTTGCGGACTCGGTCGAGTTACAGAGCTCTCTCTTTCATCTCTTTCACTCAAAGGCCAACTCTCTCAGTCCCTTTTCAATATTTTGAGCCTCTCTGTTCTTGACCTTTCAAACAACTTCCTCTATGGCTCAATCCCACCTCAGATATCCAATCTTCGGAGCTTGAAGGTGCTCGCTCTAGGCGAAAATCAGTTTTCCGGCGACTTCCCTATCGAACTCACTGAGTTGACTCAGTTGGAGAATCTCAAGTTGGGGACTAATTTATTCACTGGTAAAATCCCGCCGGAGCTTGGAAATTTGAAGCAGTTACGGACCCTTGACCTCTCTGGCAATGCCTTCATCGGAAATGTTCCGCCACACATCGGAAACTTGACGAGGATTTTATCCTTGGACCTCGGCAACAACCTTTTATCAGGTTCACTCCCATTAACCATCTTCACTGAGCTTACATCTTTAACTTCTCTGGACATTTCAAACAACTCGTTTTCGGGTTCAATCCCACCTGAAATTGGTAATCTAAAGCATTTGACTGGCCTTTATATCGGCATTAATCACTTTTCCGGTGCATTGCCTCCTGAAGTTGGTAACCTTGTATTGCTGGAGAACTTTTTTTCGACGTCTTGTTCTTTAACTGGTCCATTGCCTGACGAACTATCCAAGTTGAAATCATTGAGCAAACTGGATCTTTCATACAACCCACTTGGGTGTTCTATCCCCAAAACAATTGGTGAATTGCAGAACTTGACTATATTGAATCTGGTTTACACTGAGCTTAATGGTTCTATTCCTGCTGAGCTTGGGAGATGCAGAAATTTGAAAACATTGATGCTTTCATTCAACTTTCTATCTGGGGAGTTGCCACAAGAGCTTTCTGAGCTTTCCATGTTGACATTTTCCGCTGAGAGGAATCAGCTTTCTGGTCCATTACCTTCCTGGCTTGGCAAATGGGATCATGTCGATTCTATTTTACTCTCGAGTAATCGGTTTACTGGCGAAATCCCACCTGAGATTGGAAATTGCTTGATGCTTAATCACCTTAGTTTGAGCAATAACTTGTTGACAGGTCCAATACCTAAAGAACTTTGTAATGCTGCATCCTTGACAGAGATTGATCTTGACAGTAATTTCCTTTCGAGTACGATTGATGACACATTTGTGCTGTGTAAAAACCTTACGCAGTTAGTTTTGGTAGACAATCAGATTGTTGGTTCAATACCAGAGTACTTCTCAGAGCTTCCCCTACTGGTAATCAACCTTGACTCCAACAATTTTACAGGTTCGTTACCAAGAAGTATATGGAACTCAGTGAATTTGATGGAATTTTCTGCTGCAAATAACCAGTTAGAGGGTCATCTCCCTCCAGAAATTGGTTATGCAGCTTCCCTTGAGAGGCTTGTTCTCAGCAACAACAGGTTGACAGGCATAATACCAGATGAAATTGGAAATCTCACAGCCCTTTCTGTTCTAAATTTGAATTCAAATCTGCTTGAAGGAACTATTCCTGCCATGCTTGGAGATTGCAGTGAACTCACCACATTGGACCTTGGAAACAACAGTCTAAACGGGTCGATTCCAGAAAGACTTGCAGACCTTGCTGAATTACAGTGCCTAGTTCTTTCACACAACAATTTATCTGGAGAAATACCTTCCAATCCGTCTGCTTATTTTCAACAGTTGACGATTCCTGATTTGAGCTTTGTTCAGCATCATGGTGTTTTCGATCTGTCTCATAATAGACTGTCTGGTACCATACCTGATGAACTGGGGAACTGTGTTGTAGTGGTGGATCTTTTACTCAACAATAATCTACTTTCTGGAGCAATTCCTAGATCTCTCTCTCAGCTAACAAACCTCACAACCTTGGATTTATCTGGCAATATGCTTACTGGTCCTATTCCTGCAGAGATTGGCAATGCTCTCAAGCTCCAAGGCCTGTATCTTGGGAATAATCACCTCATGGGCATGATCCCCAAAAGCTTTAGTCATTTGAGTAGCTTGGTAAAGTTGAACTTAACTGGTAATAAATTATCTGGTTCGGTACCAAAAACTTTTGGTGGTCTGAAAGCTCTAACTCATTTGGATTTAAGTTGTAATGAGTTGGATGGTGATCTTCCTTCTTCTCTGGCTAGCATGCTGAATCTTGTGGGGCTTTATGTACAGGAGAACAGGCTTTCTGGTCAGGTTGTTGAACTTTTCCCAAGTTCCATGACATGGAAGATTGAAACTTTGAATTTGAGTAATAACTGTTTTGAGGGTGTACTTCCACGAACATTGGGCAACCTTTCATACTTGACGACTCTGGATCTTCATGGAAATAAGTTCACAGGGTCAATCCCTTCAGATCTTGGGGATCTTATGCAACTTGAATACTTAGATGTTTCGAACAACAGGCTCTCAGGGGAGATTCCAGAGAGAATATGCAGCCTCATCAATATGTTTTATCTGAATTTAGCAGAAAACAGTCTTGAAGGGCCAATTCCGAGAAGTGGCATTTGCCAGAATCTATCCAAAAGTTCACTTGCCGGTAACAAGGACCTTTGTGGGAGAATCCTGGGTTTCAATTGCCGGATCAAAAGCTTAGAGAGATCTGCCGTCTTGAATGCTTGGAGTGTTGCTGGGATTATCATTGTGAGCGTTCTCATCGTTCTAACTGTGGCATTTGCGATGCGAAGACGGATTATCAGAAGCCAGAGAGATAATGATCCAGAGGAAATGGAGGAAAGCAAGTTAAACAGTTTCATAGACCCAAATCTCTATTTCTTAAGCAGCAGCAGATCAAAAGAGCCTTTAAGCATCAATGTGGCCATGTTTGAGCAGCCCCTTCTGAAATTAACTTTGGTTGATATCCTGGAAGCAACCAATAACTTCTGTAAAACAAACATTATTGGAGATGGAGGATTTGGTACCGTCTACAAGGCCACTTTGCCTGATGGAAAAGTTGTTGCTGTGAAGAAGCTAAGCGAAGCAAAAACACAGGGACATAGAGAATTTATTGCTGAAATGGAAACTATAGGCAAAGTAAAGCACCATAATCTTGTTCCACTGCTTGGCTACTGTTCTTTTGGGGAGGAGAAGCTCCTTGTGTATGAGTATATGGTGAATGGTAGCTTGGATCTTTGGCTGAGAAACCGAACCGGTACTCTCGAAGTCCTTAACTGGGAGACTCGCTTCAAAGTCGCTTCAGGCGCAGCCCGTGGATTGGCATTTCTTCACCATGGATTCATACCCCACATTATTCATAGAGATGTTAAAGCAAGCAATATACTCCTGAACCAAGACTTTGAACCAAAAGTTGCTGACTTTGGACTGGCAAGATTGATCAGTGCTTGTGAGACTCATGTGACGACCGAGATTGCTGGAACCTTTGGTTACATCCCACCGGAGTACGGGCAGAGTGGGCGGTCGACTACGAAAGGTGACGTTTATAGCTTCGGTGTGATTCTACTGGAATTGGTAACTGGGAAGGAACCAACTGGACCTGACTTTAAAGAAATTGAGGGTGGAAATCTGGTTGGTTGGGTGTTTCAGAAGATCAACAAGGGTCAGGCTGCAGATGTTCTGGATGCCACAGTTCTGAATGCTGATTCCAAGCATATGATGCTTCAAACTCTTCAGATTGCTTGTGTTTGCTTGTCAGAAAATCCTGCTAATAGACCTTCCATGCTTCAGGTATTGAAGTTTCTTAAAGGGATCAAAGATGAGTAA 3915 42.55 MVFHMGMELKRFFFIFIVCFELCILSSNGATVQNEIIIERESLISFKASLENSEILPWNSSAPHCFWAGVSCGLGRVTELSLSSLSLKGQLSQSLFNILSLSVLDLSNNFLYGSIPPQISNLRSLKVLALGENQFSGDFPIELTELTQLENLKLGTNLFTGKIPPELGNLKQLRTLDLSGNAFIGNVPPHIGNLTRILSLDLGNNLLSGSLPLTIFTELTSLTSLDISNNSFSGSIPPEIGNLKHLTGLYIGINHFSGALPPEVGNLVLLENFFSTSCSLTGPLPDELSKLKSLSKLDLSYNPLGCSIPKTIGELQNLTILNLVYTELNGSIPAELGRCRNLKTLMLSFNFLSGELPQELSELSMLTFSAERNQLSGPLPSWLGKWDHVDSILLSSNRFTGEIPPEIGNCLMLNHLSLSNNLLTGPIPKELCNAASLTEIDLDSNFLSSTIDDTFVLCKNLTQLVLVDNQIVGSIPEYFSELPLLVINLDSNNFTGSLPRSIWNSVNLMEFSAANNQLEGHLPPEIGYAASLERLVLSNNRLTGIIPDEIGNLTALSVLNLNSNLLEGTIPAMLGDCSELTTLDLGNNSLNGSIPERLADLAELQCLVLSHNNLSGEIPSNPSAYFQQLTIPDLSFVQHHGVFDLSHNRLSGTIPDELGNCVVVVDLLLNNNLLSGAIPRSLSQLTNLTTLDLSGNMLTGPIPAEIGNALKLQGLYLGNNHLMGMIPKSFSHLSSLVKLNLTGNKLSGSVPKTFGGLKALTHLDLSCNELDGDLPSSLASMLNLVGLYVQENRLSGQVVELFPSSMTWKIETLNLSNNCFEGVLPRTLGNLSYLTTLDLHGNKFTGSIPSDLGDLMQLEYLDVSNNRLSGEIPERICSLINMFYLNLAENSLEGPIPRSGICQNLSKSSLAGNKDLCGRILGFNCRIKSLERSAVLNAWSVAGIIIVSVLIVLTVAFAMRRRIIRSQRDNDPEEMEESKLNSFIDPNLYFLSSSRSKEPLSINVAMFEQPLLKLTLVDILEATNNFCKTNIIGDGGFGTVYKATLPDGKVVAVKKLSEAKTQGHREFIAEMETIGKVKHHNLVPLLGYCSFGEEKLLVYEYMVNGSLDLWLRNRTGTLEVLNWETRFKVASGAARGLAFLHHGFIPHIIHRDVKASNILLNQDFEPKVADFGLARLISACETHVTTEIAGTFGYIPPEYGQSGRSTTKGDVYSFGVILLELVTGKEPTGPDFKEIEGGNLVGWVFQKINKGQAADVLDATVLNADSKHMMLQTLQIACVCLSENPANRPSMLQVLKFLKGIKDE 1304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20257695 20261609 - Lsi05G012450.1 Lsi05g01245 663737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01245 1304 Pfam Leucine Rich Repeat 531 553 IPR001611 GO:0005515
Lsi05g01245 1304 Pfam Leucine Rich Repeat 221 243 IPR001611 GO:0005515
Lsi05g01245 1304 SMART LRR_typ_2 530 552 IPR003591 -
Lsi05g01245 1304 SMART LRR_typ_2 733 756 IPR003591 -
Lsi05g01245 1304 SMART LRR_typ_2 291 315 IPR003591 -
Lsi05g01245 1304 SMART LRR_typ_2 685 709 IPR003591 -
Lsi05g01245 1304 SMART LRR_typ_2 98 122 IPR003591 -
Lsi05g01245 1304 SMART LRR_typ_2 194 218 IPR003591 -
Lsi05g01245 1304 SMART LRR_typ_2 831 854 IPR003591 -
Lsi05g01245 1304 SMART LRR_typ_2 219 243 IPR003591 -
Lsi05g01245 1304 SMART LRR_typ_2 711 732 IPR003591 -
Lsi05g01245 1304 SMART LRR_typ_2 855 879 IPR003591 -
Lsi05g01245 1304 SMART LRR_typ_2 553 577 IPR003591 -
Lsi05g01245 1304 SMART LRR_typ_2 601 624 IPR003591 -
Lsi05g01245 1304 SMART LRR_typ_2 170 193 IPR003591 -
Lsi05g01245 1304 SMART LRR_typ_2 757 781 IPR003591 -
Lsi05g01245 1304 ProSiteProfiles Protein kinase domain profile. 1026 1304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01245 1304 Pfam Leucine rich repeat 556 614 IPR001611 GO:0005515
Lsi05g01245 1304 Pfam Leucine rich repeat 810 868 IPR001611 GO:0005515
Lsi05g01245 1304 SUPERFAMILY L domain-like 55 367 - -
Lsi05g01245 1304 SUPERFAMILY L domain-like 643 918 - -
Lsi05g01245 1304 CDD STKc_IRAK 1032 1301 - -
Lsi05g01245 1304 ProSitePatterns Protein kinases ATP-binding region signature. 1032 1055 IPR017441 GO:0005524
Lsi05g01245 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 809 897 - -
Lsi05g01245 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 74 140 - -
Lsi05g01245 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 351 439 - -
Lsi05g01245 1304 Gene3D Ribonuclease Inhibitor 639 706 IPR032675 -
Lsi05g01245 1304 Gene3D Ribonuclease Inhibitor 295 367 IPR032675 -
Lsi05g01245 1304 Gene3D Ribonuclease Inhibitor 38 144 IPR032675 -
Lsi05g01245 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 959 1304 - -
Lsi05g01245 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 450 790 - -
Lsi05g01245 1304 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 139 346 - -
Lsi05g01245 1304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 351 439 - -
Lsi05g01245 1304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 959 1304 - -
Lsi05g01245 1304 Gene3D Ribonuclease Inhibitor 216 294 IPR032675 -
Lsi05g01245 1304 Gene3D Ribonuclease Inhibitor 145 215 IPR032675 -
Lsi05g01245 1304 Gene3D Transferase(Phosphotransferase) domain 1 1102 1304 - -
Lsi05g01245 1304 SUPERFAMILY Protein kinase-like (PK-like) 1007 1298 IPR011009 -
Lsi05g01245 1304 Gene3D Phosphorylase Kinase; domain 1 989 1101 - -
Lsi05g01245 1304 SUPERFAMILY L domain-like 371 635 - -
Lsi05g01245 1304 SMART LRR_sd22_2 170 196 - -
Lsi05g01245 1304 SMART LRR_sd22_2 855 881 - -
Lsi05g01245 1304 SMART LRR_sd22_2 98 124 - -
Lsi05g01245 1304 SMART LRR_sd22_2 577 603 - -
Lsi05g01245 1304 SMART LRR_sd22_2 685 717 - -
Lsi05g01245 1304 SMART LRR_sd22_2 458 481 - -
Lsi05g01245 1304 SMART LRR_sd22_2 219 245 - -
Lsi05g01245 1304 SMART LRR_sd22_2 291 317 - -
Lsi05g01245 1304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 809 897 - -
Lsi05g01245 1304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 450 790 - -
Lsi05g01245 1304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 139 346 - -
Lsi05g01245 1304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1148 1160 IPR008271 GO:0004672|GO:0006468
Lsi05g01245 1304 Gene3D Ribonuclease Inhibitor 806 926 IPR032675 -
Lsi05g01245 1304 Gene3D Ribonuclease Inhibitor 707 805 IPR032675 -
Lsi05g01245 1304 Pfam Leucine rich repeat N-terminal domain 39 72 IPR013210 -
Lsi05g01245 1304 Pfam Protein tyrosine and serine/threonine kinase 1030 1298 IPR001245 GO:0004672|GO:0006468
Lsi05g01245 1304 Gene3D Ribonuclease Inhibitor 368 638 IPR032675 -
Lsi05g01245 1304 SMART serkin_6 1026 1298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi05g01245 1304 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 74 140 - -
Lsi05g01245 1304 PRINTS Leucine-rich repeat signature 685 698 - -
Lsi05g01245 1304 PRINTS Leucine-rich repeat signature 222 235 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00374 Lsi-Chr4:3715565 Lsi05g01245 Lsi-Chr5:20257695 3.57E-14 dispersed
Lsi05g01245 Lsi-Chr5:20257695 Lsi09g00720 Lsi-Chr9:8278768 9.93E-59 dispersed
Lsi06g01157 Lsi-Chr6:21775528 Lsi05g01245 Lsi-Chr5:20257695 6.71E-11 dispersed
Lsi08g00568 Lsi-Chr8:13928215 Lsi05g01245 Lsi-Chr5:20257695 5.97E-73 dispersed
Lsi09g01615 Lsi-Chr9:24351370 Lsi05g01245 Lsi-Chr5:20257695 1.65E-06 dispersed
Lsi11g00025 Lsi-Chr11:257189 Lsi05g01245 Lsi-Chr5:20257695 1.60E-42 dispersed
Lsi11g01105 Lsi-Chr11:19223249 Lsi05g01245 Lsi-Chr5:20257695 2.86E-21 dispersed
Lsi05g01245 Lsi-Chr5:20257695 Lsi05g01804 Lsi-Chr5:25311429 5.12E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83657 PF07714 PK_Tyr_Ser-Thr 1.20E-45 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01245 - - csv:101215443 2380.13