Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01248 ATGCCTAGTGGTGCAATTACTGACCAGAGCTTTCTAGCTTACCCAATTCCCAGTTCAATGCCTAGCTCCTCTGAATTCTCCAGTTCCTTAAGGAAAATGGATGGTTATGAAGAAGTGTGTCTGCTTGGAGACGGCTTTGATCCGTCCGGAATTGTGAGGATAAGGGAAGATGAATATGATAGCAGATCGGGCAGCGACAACATCGATGGCGCTGTATCTGGGGATGATCAAGATGCTAATGACGAACAACCACCAAAAAGGAAGAAGTACCATAGGCATACTCCCCATCAGATCCAAGAGCTTGAGATTTTCTTTAAGGAGTGTCCTCATCCTGATGATAAACAAAGAAGTGAGCTCAGTAGGAGGCTTGGTTTGGAGACAAAGCAAGTGAAGTTTTGGTTTCAAAATCGTCGAACACAGATGAAGACACAAATAGAACGACATGAGAATGCAATTCTTAAGCAAGAAAACGATAAGCTCCGGGCCGAGAATAGTGTGATGAAGGATGCTATTTCTAACCCAACGTGTAATACTTGTGGTGGCCCTTCAATTCCTGTTCATTTATCATTTGAAGAACACCAGCTTAGGATTGAGAATGCCAGATTAAGAGATGAACTGCACCGGTTATATGCTGTCACCAACAAGTTCTTGGGCTGGCCGGTTTTGCCTTTTGCCAATCATGGCTCTTCACCAAGTTCTGACTCTTGCTTGGAACTTTCTGTAGGAAGAAATGGAATTGGAAATTTGAGTAACATTTCTGATTCTATGGGACTTAACTTGGGAAACGAACTTTTCAGTGCTGGCCCTATGATGCCTGTTAGTAAGCCTGAAATAGGCATGCTAAGTAATGATATACCACTTGAGAGAACAATATATGTGGATCTTGCTTTGGAAGCTATGAATGAATTGGTTAAGATGGCTCAAATGGATGGTCCCCTTTGGATCAGAAGTCGGGATGGCAAAGAGACATTGAACCTTGATGAATATTCAAGGTCATTTCCTTCTTCGGCTGGTATGAAGCACGGTAATTGGACAACAGAGGCGACCAGAGATACTACAATGGTCATCATCAACAGCTTGGCACTCGTTGAGACATTGATGGACGCAAACCGATGGGCAGAAATGTTTCCTTGCTTGATTGCTGGAGCTACTACAATCGATGTGATATCAAGTGGCATGGGTGGAACTAGAAATGGTGCATTACAATTGATGCATGCTGAACTCCGAGTACTTTCCCCGCTTGTTCCTGTTCGTACACTTAAGTTCCTCCGCTTCTGCAAGCAGCACGCTGATGGTTTATGGGCTGTAGTTGATGTTTCCATTGGAGAAGGTTCAAATTCAAACTCGTTTTTCGGTTGCAGGAGGCTCCCTTCGGGCTGTGTTGTGCAAGATATGCCTAATGGTTTCTCCAAGGTTACATGGATGGAACATACAGAATATGATGAGACTGTTATACACCAGCTTTACCGCCAGTTAATTAGTTCAGGCAGCGGCTTCGGTTCACAACGTTGGCTTGCTACCCTTCAAAGACAATGCGACTGTTTGGCAATTCTTATGTCTTCTACTATTCCCACCGAAGATCCTGCAGGAATATCGCCATGTGGTAGGAGAAGTATGCTGAAGCTATCGCAGCGTATGGTGGATAACTTCTGTTCTGGGGTTTGTAGTTCCACTTTGCATAAGTGGGACAAGCTCATTGTAGGCAATATTAGTGAAGATGTAAAAGTGATGGCTAGAAAGAGCATCAACGATCCTGGCGAGCCACCCGGTATTGTGTTGAGTGCTGCAACTTCGGTTTGGATGCCAGTAACTCAGCAGAGGCTGTTTGCATTCTTGCAAGACGAGTGCTTACGGAGTGAGTGGGATATTTTATCCAACAGCCGACCAATGCTCGAGATGTTGCGCATCTCAAAAGGCCAAGGACCGGATAACCGTGTTTCTCTCCTGCGTGCTAATCCCATGAACGCTAATGAGAGCACAATGTTCATATTGCAAGAGACATGGACTGATATATCAGGCTCACTGGTTGTTTACGCTCCAGTCGACACTTCATCGGTTAATTTGGTGATGCGCGGAGGAGATTCTGCTTATGTATCACTATTACCATCAGGATTTGCAATTCTCCCCATTGGTCCATCCAACTATGCTTGTACAAACAACGACCAAGACGCATCGGTCAAGTCAGGCGGCATTAACAGTGGCCATGGTGGTGGATGTCTGCTCACAGTTGCATTCCAGATTTTGGTGAATAGCCTTCCAACGGCCAAACTCACCGTCGAATCAGTTGAGACATTTAACAATCTCATTTCTTGCACCATCGAAAAGATCAAAACTGCCCTTCAAATATCGTAA 2352 44.64 MPSGAITDQSFLAYPIPSSMPSSSEFSSSLRKMDGYEEVCLLGDGFDPSGIVRIREDEYDSRSGSDNIDGAVSGDDQDANDEQPPKRKKYHRHTPHQIQELEIFFKECPHPDDKQRSELSRRLGLETKQVKFWFQNRRTQMKTQIERHENAILKQENDKLRAENSVMKDAISNPTCNTCGGPSIPVHLSFEEHQLRIENARLRDELHRLYAVTNKFLGWPVLPFANHGSSPSSDSCLELSVGRNGIGNLSNISDSMGLNLGNELFSAGPMMPVSKPEIGMLSNDIPLERTIYVDLALEAMNELVKMAQMDGPLWIRSRDGKETLNLDEYSRSFPSSAGMKHGNWTTEATRDTTMVIINSLALVETLMDANRWAEMFPCLIAGATTIDVISSGMGGTRNGALQLMHAELRVLSPLVPVRTLKFLRFCKQHADGLWAVVDVSIGEGSNSNSFFGCRRLPSGCVVQDMPNGFSKVTWMEHTEYDETVIHQLYRQLISSGSGFGSQRWLATLQRQCDCLAILMSSTIPTEDPAGISPCGRRSMLKLSQRMVDNFCSGVCSSTLHKWDKLIVGNISEDVKVMARKSINDPGEPPGIVLSAATSVWMPVTQQRLFAFLQDECLRSEWDILSNSRPMLEMLRISKGQGPDNRVSLLRANPMNANESTMFILQETWTDISGSLVVYAPVDTSSVNLVMRGGDSAYVSLLPSGFAILPIGPSNYACTNNDQDASVKSGGINSGHGGGCLLTVAFQILVNSLPTAKLTVESVETFNNLISCTIEKIKTALQIS 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20287533 20292248 - Lsi05G012480.1 Lsi05g01248 663740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01248 783 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Lsi05g01248 783 CDD START_ArGLABRA2_like 294 512 - -
Lsi05g01248 783 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
Lsi05g01248 783 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 37 781 - -
Lsi05g01248 783 MobiDBLite consensus disorder prediction 57 94 - -
Lsi05g01248 783 Coils Coil 138 170 - -
Lsi05g01248 783 SMART HOX_1 86 148 IPR001356 GO:0003677
Lsi05g01248 783 Pfam Homeodomain 87 142 IPR001356 GO:0003677
Lsi05g01248 783 Gene3D - 73 160 - -
Lsi05g01248 783 Pfam START domain 295 513 IPR002913 GO:0008289
Lsi05g01248 783 SMART START_1 294 514 IPR002913 GO:0008289
Lsi05g01248 783 SUPERFAMILY Homeodomain-like 71 144 IPR009057 -
Lsi05g01248 783 SUPERFAMILY Bet v1-like 286 514 - -
Lsi05g01248 783 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 37 781 IPR042160 -
Lsi05g01248 783 ProSiteProfiles START domain profile. 285 517 IPR002913 GO:0008289
Lsi05g01248 783 CDD homeodomain 87 144 IPR001356 GO:0003677
Lsi05g01248 783 MobiDBLite consensus disorder prediction 1 29 - -
Lsi05g01248 783 SUPERFAMILY Bet v1-like 542 777 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00411 Lsi-Chr1:3510514 Lsi05g01248 Lsi-Chr5:20287533 6.79E-29 dispersed
Lsi05g01248 Lsi-Chr5:20287533 Lsi10g00143 Lsi-Chr10:2279076 0 dispersed
Lsi05g01248 Lsi-Chr5:20287533 Lsi05g02010 Lsi-Chr5:27152991 0 wgd
Lsi05g01248 Lsi-Chr5:20287533 Lsi09g01939 Lsi-Chr9:28175003 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25357 PF01852 START 5.00E-47 CL0209 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01248 K09338 - csv:101218216 1454.11