Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi05g01253 ATGGGCTTTCTCCGGCGACTTTTCCGTCCAAAAAAGCCCCCTCCCGACCCCCCGGACTTCACCCCAGACCCCAACAAGAAGAAAAACAAGCGGTGGAGCTTCCCCAAGTCCGCCCACAACCACCACTCTCGCCCTTACGCCACCCCCTCCCAACCCAATGCATTTGGCCCCTCCTCTTCCTACACAGAACCTCTCGATGCCAACAAGCACGCGATTGCTGTAGCTGCCGCCACCGCCGCCGTCGCCGAGGCAGCTCTAGCCGCCGCCCATGCTGCTGCCGAGGTTGTTCGGCTCACCAGCAGCGGCACCACTCACGCTAATGCTAACCGCCGTTGGATGGAGGAGGCGGCTGCCGTTAAAATCCAGTCCGCCTTTCGAGGTTATTTGGCAAGGAGGGCACTTAGGGCACTAAAGGCATTGGTAAAGCTTCAAGCTTTGGTGAGAGGTCACATTGTGAGAAAGCAAATGGCTGACATGTTAAGGCGAATGCAGACACTGGTTAGGTTGCAATCTCGAGCTTGTGCTGGTCGTTCAAACTTATCAGATTCTTTGCATTCTACCAGCAAATCCTCGCTCTCTCATATCCGTGTCCAAGCAACCCCCAATGGAAATGAACATCAAATCAGTGCTCATCATGGTAATAAATTTGACAACTCTGCACTTCTGAAGAGATGTGGTTCGAATTCAAATTTGAAGGATGTAACTGTTGTGGATAGAGCACCAGTCGGGTCGAGTTGGTTAGACCGTTGGATGGAAGAAAACTTGTGGAACGATCGAGAGTTGCCTCTAAAAAATATTCATGCTATAGATGAGAAAACAGACAAAATCCTTGAAGTAGATACATGGAAACCTCATTTCAAGTCTCAAGGAAACATCAGCAGCTTTAAAAATTCTCAAATGGCTCCAGATTTTAAAAACCACCAGAACTTTACAACGATTGACTCCCCATCAAAACACTCGTCAAAGGCTGCAAATCCAGTTTCGAGTCTTTCCTCAGGGGAAGCATCCTTGAGCTCCTTAAAATTCCCTGTTGGAAAATATGAAACAGCTCCAAGAACAGCAGAAAATAGCCCTCAAGTGCATTCTGCTTCATCCAGGCGTGGAAATGGCGCAAAGAGAGCTACCTTGTCGCCGACAAGAAGTGAGTATGCATGGGGATATTTCAGTGGCTATGCGGGTTATCCAAACTATATGGCCAACACAGAGTCATCCAAAGCAAAAGTCAGGTCACAAAGTGCCCCGAAACAGAGGGTCGAGTTAGAGAAATTTGGATCGAACAAGCGGTATGCTCAGGTATCTTGGGATGCATGGAGCTTTTCAAACAATGGTATCTCCCATGAACTCAATTCATCAAACAATGCCAATTCAGTAGCTGATCGCATGACTAAGTTTGCAAGTACCAAATCAAGATGA 1413 48.12 MGFLRRLFRPKKPPPDPPDFTPDPNKKKNKRWSFPKSAHNHHSRPYATPSQPNAFGPSSSYTEPLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSSGTTHANANRRWMEEAAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQMADMLRRMQTLVRLQSRACAGRSNLSDSLHSTSKSSLSHIRVQATPNGNEHQISAHHGNKFDNSALLKRCGSNSNLKDVTVVDRAPVGSSWLDRWMEENLWNDRELPLKNIHAIDEKTDKILEVDTWKPHFKSQGNISSFKNSQMAPDFKNHQNFTTIDSPSKHSSKAANPVSSLSSGEASLSSLKFPVGKYETAPRTAENSPQVHSASSRRGNGAKRATLSPTRSEYAWGYFSGYAGYPNYMANTESSKAKVRSQSAPKQRVELEKFGSNKRYAQVSWDAWSFSNNGISHELNSSNNANSVADRMTKFASTKSR 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20312916 20316671 - Lsi05G012530.1 Lsi05g01253 663745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi05g01253 470 MobiDBLite consensus disorder prediction 311 333 - -
Lsi05g01253 470 MobiDBLite consensus disorder prediction 1 62 - -
Lsi05g01253 470 Pfam IQ calmodulin-binding motif 116 135 IPR000048 GO:0005515
Lsi05g01253 470 Pfam IQ calmodulin-binding motif 138 155 IPR000048 GO:0005515
Lsi05g01253 470 SMART iq_5 113 135 IPR000048 GO:0005515
Lsi05g01253 470 SMART iq_5 136 157 IPR000048 GO:0005515
Lsi05g01253 470 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Lsi05g01253 470 PANTHER IQ-DOMAIN 5-RELATED 1 468 - -
Lsi05g01253 470 Pfam Protein of unknown function (DUF4005) 357 440 IPR025064 -
Lsi05g01253 470 PANTHER CALMODULIN-BINDING PROTEIN 1 468 - -
Lsi05g01253 470 ProSiteProfiles IQ motif profile. 138 165 IPR000048 GO:0005515
Lsi05g01253 470 MobiDBLite consensus disorder prediction 352 376 - -
Lsi05g01253 470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 160 IPR027417 -
Lsi05g01253 470 MobiDBLite consensus disorder prediction 43 62 - -
Lsi05g01253 470 MobiDBLite consensus disorder prediction 348 376 - -
Lsi05g01253 470 MobiDBLite consensus disorder prediction 450 470 - -
Lsi05g01253 470 Gene3D - 113 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi05g01253 - - - csv:101216161 781.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g01253 Lsi-Chr5:20312916 Lsi05g01633 Lsi-Chr5:23981434 1.01E-34 dispersed
Lsi11g00461 Lsi-Chr11:4806638 Lsi05g01253 Lsi-Chr5:20312916 3.13E-06 dispersed
Lsi09g01649 Lsi-Chr9:24809506 Lsi05g01253 Lsi-Chr5:20312916 8.16E-22 transposed
Lsi09g01826 Lsi-Chr9:27079684 Lsi05g01253 Lsi-Chr5:20312916 1.50E-16 transposed
Lsi05g01253 Lsi-Chr5:20312916 Lsi09g00299 Lsi-Chr9:3080377 2.35E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g612 . Blo15g00158 Bda05g00058 . Bpe03g00297 . . . Cmo16g00149 . . . . . Sed01g3916 . Cpe14g00120 Bhi01g01353 Tan01g0278 Cmetu09g1857 Lac11g2130 Hepe07g0179 Mch10g0175 . Cla01g00296 Cam01g0307 Cec01g0297 Cco01g0314 Clacu01g0307 Cmu01g0292 Cre09g2216 . . . . Lsi05g01253 Csa05g00319 Chy09g01189 Cme06g00975 . . Bda06g00672 . . . . . . . . Cma16g00142 . . . . . Bhi12g00208 . . Lac11g2130 Hepe06g1578 . Lcy12g1690 Cla05g00859 Cam05g0945 Cec05g0950 Cco05g0950 Clacu05g0932 Cmu05g0890 Cre05g0975 . Csa03g01689 Chy06g00922 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006767 3 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 4 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi05g01253 Lsi_Chr05 FPKM 18.404411 22.276247 22.959152 25.558664 21.027475 19.314312 18.104259 12.739584 13.569141 14.645725